Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211662g00007 ATGGGTCTTTGTAGATTTGAAAGAGCAAAAACAAGGATTCAAAGACACAAACAGTGTAAAGAGAATAAATTTATTTCGGATGATTTTGAATGGACCAGTGAAATTCCAGAATGTCCAGTATATTATCCATCAAAGAAGGAATTCAAGAATCCTTTGATATATCTACAGCAAATTGCTCCAGAGGCTTCTAAATTTGGAATATGCAAAATTGTTTCTCCTGTAATTGCATCTGTTCCTGCTGATGTTGTCTTAACAAAGGAGAATAAAGACTTTAAATTTGAAACAAATGTGCAGCCTCTTCGGCTTTCTAAATGGAATGATAAAGATATAATGAACTTTTCAATGAGTGGAAGAAAATACACATATCAAGAATTTGAGGTTCTAGCAAATCAGGCTTTTATCACTTCAGGCTGTGTTTCCTCTTCTGATGTGGAAAAAAGATTCTGGCATGAGATGGTGAATGGAGAGAAGGGAACGGTTGAGTATGGAGTCAATATTGAGGGCAGTGCCTTTTCATGCAGTCCTAATGACAAGCTTGGAAGAAGCAAATGGAATTTGAAGAATTTTTCAAGACTGCCGCAATCTACACTGAGATTAGTTGGCGAAGAAATTCCGGGAATAACTGATCCTATGCTTTACATTGGGATGGTGTCCAGCATGTTTGCATGGCATGTAGAAGATCATCACTTGTATAGCATAAATTATCACCATTCAGGTGCTAACAAAATCTGGTATGGAGTGCCTGCTTCTGCAGCCTCCCAGTTTGAAAATGTTGTATTGCATCATGTGTATAACCATAAAATCTTGTCGAAACATGGCGAAGACAAGGCTTTCCGGCTTCTTGCACATAAAACCACAATGTTCCCTCCAAATATATTGCTGCAACATGGTGTGTCTGTTTACAAGGCTGTGCAGAAGCCTGGGGAGTTTGCCATCTCCTTTCCTAGAGCATATCATGCCGGATTTAGTCTCGGTTTTAACTGTGGAGAAGCAGTGAACTTTGCTATTGGAGACTGGTTTCCAATGGGGGCTATAGCTCGCAGGCGTTACGCATATCTCAAAATGCTTCCTATAATTCCATTTGAGGAACTTCTTTGTAAAGAGGCAATGGAATTTTATAAGTCCTCAAAAGTAAGAGGTTCAATCAGCAAAAGTCATTATGATTTACAATCTTATCTTGCTACTGTTGTGTCTTTTGTGCACCTTATGCAACTTTATGAGAAGGCACTTTCGCGACTTAATGGTTCAAGAGAATGTGATGCCGTAGGTACCTTGATTTGTCGCGACTGCCATAGGGATTGTTATGTAGCTTACTTGATGTGCAAGCACTGCAATTCTCTCCCCATTTGTCTTTACCATGACATTGCATTGCAGATATGTTCATGTGGGAGAAAATATACTGTTTATAAAAGGGATGATCTTATAGAATTCAAGAATGCTGTGAAGAGTTTCGAACAAGAAGAAAGTATAAAGTTAAATCTTAAAGGGAAGGTGAATTTTGAAGAAGACATGTTATCCTCCAGAAATGATTGCATCCAAGAATCCCAGAATATTCTTTGGCATGAAGATGAAATAGGCCGGTTAAAGCTCAAGGTAGAAAAGATGAAGGCGGCAAAAACTAAGAGCTGGAAACTCGCCTTCAACGACCCTTCTATTTCCTCCACATTGAGGCCCCACCACGTTGAACAGCTCTTGATCCGAACCCTCGACGATTCCAAGTTAGCTTTGAGGTTCTTCAACTTCCTTGGTTTGCACAAAAGCTTCAACCATTCCACAACCGCCTTTGCCATTTTGGTTCATGCCCTTGTTCGTGAGAAGCTCTTTTGGCCCGCCAATTCGCTCTTGCAAACTCTTCTCTTACGTGGGTTGGACCCAAAATTCGTTTTTTCATGCTTCTTGGATTGTCATAGGAAATGTAAGTTTTTGTCAAATTTGGGTTTTGATTTGTTGGCTCAGAGTTACCTGCAAAATAGAAGGGTTTTAGATGCTGTGGTGGTTGCAAAGCTCATGCTTGAAAACAAGTTGTTGCCTGAAGTTAGAACACTGAGTGCGCTTTTGAATGGTTTATTGAGAATTAGAAGGTTTATAATGGTTTGTGAATTGTTTGATGAATCGGTGAATGTGGGTGTTCGACCGGATTCTTATACTTGTTCGGCTGTGGTTCGGAGCTTGTGTGAATTGAAGGATTTTTTCAAGGCTAGGGAGAAGGTTAGGTGGATGGAAGTGAATAAGTTTGATCTGAGTATTGTAACTTATAATGTCTTAATTCATGGGCTATGCAAGGGTGATCGAGTTTCGGAAGCTGTTGAGGTTAAAAGATCATTGAGTGGAAAGGGTCTGAAAGCTGATGTGGTTACATACTGCACCTTAGTTCTTGGTTTTTGTAGGGTACAGCAATTTGGGGCCGGATTGCAGCTTTTGAATGAAATGGTTGAATTGGGGTTTGTTCCGAGTGAAGCTGTTTTATCAGGGCTAGTGGATGGGTTAAGAAAGGAAGGAAAGGTTGATGATGCTTATAATTTGGTTGTTCAGGTAAGCAGGTTTGGTTTTCTGCCAAATTTGTTTGTTTGTAATGCATTAATGAACGCTTTGTGCAAAGGTGGAGATTTGGATAAATCAGAGTCGCTTTATAATAATATGTGTTTGGTGAACTTGCACCCCAACGATGTTACTTATTCTATTCTGATTGATTCGTTTTGCAGAAGGGGGAGGTTGGATGTCGCGATATCTTATTTCGATAGAATGTTAGAGGCTGGCATAGCAGAAACTGTATATGCATACAACTCCATGATAAATGGCCAATGCATGTTTGGGAATTTCAGTGCCGCCGAGTCATTGTTCGCTCGGATGATCAATAAAGGTTTGGAGCCTACTGCAACAACCTTTACGCCATTGATTAATAGATATTGCAAAGATCTACAACTAAGAAAAGCATTCCAACTATATGATATGATGATTGAAAAAGGAATTGCTCCGAATGTGTATACATTCACTGTACTCATTTCTGGGCTTTGCAGTGTAAATAATATGGCTGAAGCATCCAAACTTTTTGTTGAAATGGTCGAAAAGAAAATCATCCCAAATGAGGTAACATATAATGTTATGATTGAAGGGTATTGTAGGGATGGTAACATTGACAAGGCCTTTGAATTGCTTGATGAGATGCTTCAGAAAGGCCTTGTTCCGGACACATATACCTACAGGCCTCTTATCAGTGGCCTTTGTTCTGTCGGCAGGGTTTCAGATGCTAAAAATTTTGTCGATGCTCTACACAAACAGGACCGCAAATTAAACGAGATGTGCTATAGTGCACTTCTACATGGTTTTTGCCAGGAAGGAAGATTGGTGGAGGCGTTGAGCTCAGCTTCTGAGATGATTCAAAGAGGAATCAATATGGATTTGGTTTGCCATGCTGTTCTCATCGACGGATCACTGAAGCAATTAGATAGGAAAACACTATTTGGTCTCTTAAAACAGATGCAGGACCAAGGATTGAAACCTGATAATGTAATATATACAAGTATGATCGATGCATTCAGCAAAGAAGGATCTTTCGAGAAGGCTTTTCGGTGTTGGGATTTGATGGTTACAGAGGAATGCTTTCCCAATGTTGTGACGTATACTGCTTTGATGAATGGTTTATGCAAGGCAGGTGAAATGGACAGAGCAGGGCTTCTTTTTAAAAGAATGATTGCTGCAAATGTCCCTCCAAATTCGATCACATATGGCTGTTTTCTTGATCGTCTCACCATGGAAGGGCATATGGAGGAAGCTATGGGTCTTCACCATGCAATGATTAAAGGGCTTTTGGCGAACACCGTAACATACAACATCCTTATCCGTGGCTTCTGCAAAAGTGGCAATGTAGGAGAAGCAGTTAAATTGTGGGATACCATGTTAAACAAAGGTCTTGAGCCGGATTTGGTTGCATATAACTTGTTAATATATGGTTGTTGTGTTAATGGAGAGCTCAACAAAGCATTTGAGTTGCGCAACGACTTGCTGAGGAGGGGGGTGAAGCCGAGGCAAAATTTCCGAGTACTGCACAAGGGGCAATGTAGGAGTAGTGGCTGA 4074 0.4026 MGLCRFERAKTRIQRHKQCKENKFISDDFEWTSEIPECPVYYPSKKEFKNPLIYLQQIAPEASKFGICKIVSPVIASVPADVVLTKENKDFKFETNVQPLRLSKWNDKDIMNFSMSGRKYTYQEFEVLANQAFITSGCVSSSDVEKRFWHEMVNGEKGTVEYGVNIEGSAFSCSPNDKLGRSKWNLKNFSRLPQSTLRLVGEEIPGITDPMLYIGMVSSMFAWHVEDHHLYSINYHHSGANKIWYGVPASAASQFENVVLHHVYNHKILSKHGEDKAFRLLAHKTTMFPPNILLQHGVSVYKAVQKPGEFAISFPRAYHAGFSLGFNCGEAVNFAIGDWFPMGAIARRRYAYLKMLPIIPFEELLCKEAMEFYKSSKVRGSISKSHYDLQSYLATVVSFVHLMQLYEKALSRLNGSRECDAVGTLICRDCHRDCYVAYLMCKHCNSLPICLYHDIALQICSCGRKYTVYKRDDLIEFKNAVKSFEQEESIKLNLKGKVNFEEDMLSSRNDCIQESQNILWHEDEIGRLKLKVEKMKAAKTKSWKLAFNDPSISSTLRPHHVEQLLIRTLDDSKLALRFFNFLGLHKSFNHSTTAFAILVHALVREKLFWPANSLLQTLLLRGLDPKFVFSCFLDCHRKCKFLSNLGFDLLAQSYLQNRRVLDAVVVAKLMLENKLLPEVRTLSALLNGLLRIRRFIMVCELFDESVNVGVRPDSYTCSAVVRSLCELKDFFKAREKVRWMEVNKFDLSIVTYNVLIHGLCKGDRVSEAVEVKRSLSGKGLKADVVTYCTLVLGFCRVQQFGAGLQLLNEMVELGFVPSEAVLSGLVDGLRKEGKVDDAYNLVVQVSRFGFLPNLFVCNALMNALCKGGDLDKSESLYNNMCLVNLHPNDVTYSILIDSFCRRGRLDVAISYFDRMLEAGIAETVYAYNSMINGQCMFGNFSAAESLFARMINKGLEPTATTFTPLINRYCKDLQLRKAFQLYDMMIEKGIAPNVYTFTVLISGLCSVNNMAEASKLFVEMVEKKIIPNEVTYNVMIEGYCRDGNIDKAFELLDEMLQKGLVPDTYTYRPLISGLCSVGRVSDAKNFVDALHKQDRKLNEMCYSALLHGFCQEGRLVEALSSASEMIQRGINMDLVCHAVLIDGSLKQLDRKTLFGLLKQMQDQGLKPDNVIYTSMIDAFSKEGSFEKAFRCWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMIAANVPPNSITYGCFLDRLTMEGHMEEAMGLHHAMIKGLLANTVTYNILIRGFCKSGNVGEAVKLWDTMLNKGLEPDLVAYNLLIYGCCVNGELNKAFELRNDLLRRGVKPRQNFRVLHKGQCRSSG 1357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211662g00007 1357 SUPERFAMILY HCP-like 790 954 - -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1063 1097 IPR002885 -
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 774 844 IPR011990 GO:0005515
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 529 706 IPR011990 GO:0005515
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 707 773 IPR011990 GO:0005515
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 917 972 IPR011990 GO:0005515
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 845 916 IPR011990 GO:0005515
Stsc211662g00007 1357 SMART cupin_9 181 351 IPR003347 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1168 1202 IPR002885 -
Stsc211662g00007 1357 Gene3D Cupin 38 395 - -
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 973 1121 IPR011990 GO:0005515
Stsc211662g00007 1357 Pfam PPR repeat 1101 1130 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat 1240 1267 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat 926 955 IPR002885 -
Stsc211662g00007 1357 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 506 955 - -
Stsc211662g00007 1357 SMART JmjN_1 37 80 IPR003349 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 958 992 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1203 1237 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat family 1272 1319 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat family 1027 1076 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat family 748 796 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat family 852 901 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat family 1167 1216 IPR002885 -
Stsc211662g00007 1357 Pfam PPR repeat family 961 1006 IPR002885 -
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 1145 1253 IPR011990 GO:0005515
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1098 1132 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 888 922 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 993 1027 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles JmjC domain profile. 181 351 IPR003347 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 818 852 IPR002885 -
Stsc211662g00007 1357 Gene3D Tetratricopeptide repeat domain 1254 1356 IPR011990 GO:0005515
Stsc211662g00007 1357 SUPERFAMILY HCP-like 1089 1314 - -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 853 887 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Stsc211662g00007 1357 Pfam jmjN domain 39 71 IPR003349 -
Stsc211662g00007 1357 SUPERFAMILY HCP-like 902 1062 - -
Stsc211662g00007 1357 Pfam JmjC domain, hydroxylase 211 334 IPR003347 -
Stsc211662g00007 1357 ProSiteProfiles JmjN domain profile. 38 79 IPR003349 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1028 1062 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 923 957 IPR002885 -
Stsc211662g00007 1357 SUPERFAMILY Clavaminate synthase-like 182 377 - -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1272 1306 IPR002885 -
Stsc211662g00007 1357 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1307 1341 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 1274 1307 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 785 819 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 961 994 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 995 1029 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 1030 1064 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 925 958 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 1205 1238 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 1170 1204 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 856 888 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 1101 1133 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 750 783 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 1309 1341 IPR002885 -
Stsc211662g00007 1357 NCBIfam pentatricopeptide repeat 890 920 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211662g00007 Stsc-Chr211662 31949 37728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211662g00007 895 1353 Glycosyltransferase AT1G05670 31.478 4.71e-69 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc211662g00007 JmjC 4.8e-37 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211662g00007 - - aip:107632504 1461.05