Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211651g00010 ATGTGGCGGTTGGCGATTTCAGAACGGCGGAGGGAATTCTCGAAGCTTCTATGCACCTTCACAGTGTCCCGTAACATGGGTGGCGGCCCCCGCACTTTCCCCGGCGGCGTCAACAAGTGGAAGTGGAAGCGCATGCACGAGAAGCGCGCACGTGACAAAGAGAAGAGACTTCTGGAACATGAGAAACAGCTCTACCAAGCTCGCATTCGCTCCCAAATACGCTCCCACCTCGCACCCGACAACTCACCCGCCACCGCCGCCGCCACCCACGCTCCTATCTCTCCCACCGACCACATTAGGGCCCTCGCCAACCGCTTCATGAAGGAAGGAGCTGAAGATCTCTGGAACGAAGACGATGGTCCTCTAACTGCTTCTTCTTCTTCTCCCATACGGCGGCAAGGTTCAATTGGGTCGCCGGTGGATTTGCGGAAGCTGATAACAGGGCAACCGAATCCTAATTCAATGAATTCGAGTGGGAATTTCGGTCAGAGGAGGGGTTACCGTTCTGTTTCTGAGGTGAACTCCGGTGTTGGTAGCAGTAAGAAACTTGCGCCTGCTGGAAGGAGGAGATTTTTGAGGAATGATAGTTCTTCTTCGAGTGAGAGTGAGAGTGAATCCGAAGACGAGAACGATTCGAGGGTTAATAATTGGGATGTTAGGAAGATGGGTAGCAGTGCTTCTTTGGGGAAGCATGATTTGAAGAGGGAGAGGAGAGTGATGCCAAAACCATATGACGAAGGGGCTGATTTTGCAGAACAAGTTGAGTTGATTAAGTATGAGATTAACAAGAGGAAGTTGAAACAGAAGGAAATGCAAGAGTACAGAGTTCAGGACCAAGAATCCATCCTAACTCAATCAAGATTTGATGAGTGCGGTATATCACCATTGACAATCAAAGCTCTTTCTTCAGCTGGTTATATCCACATGACCCGGGTGCAAGAGGCAAGCCTTTCTGTTTGCCTTGAGGGTAAGGATGCTTTGGTCAAAGCTAAAACCGGCACGGGAAAGAGTGCAGCGTTTTTGCTTCCTGCCATTGAAGCAGTTTTGAAAGCTATGGGGAGCAAGTCGCGTCATCATGTGCCCCCTATATTTGTTCTTATTCTCTGCCCTACTAGAGAACTTGCTAGTCAAATTGCTGCCGAAGCAAAGGCTTTGCTCAAGCATCATGATGCCATTGGTGTACAAACTCTTGTAGGAGGTGTGCGATTTAAAGTTGACCAAAAGCATCTTGAATCTGATCCATGCCAGATACTTGTTGCTACCCCTGGTAGGTTGCTAGATCATATTGAGAGTAAGTCTGGAATATCTGTGCGATTGATGGGCTTGCAGATGCTTGTACTTGATGAAGCTGATCATTTACTAGATCTTGGATTCCGAAAGGATGTAGAAAAGATTCTTGACTGTTTGCCTCGTCAAAGGCAATCCTTGATGTTTTCTGCGACCATCCCAAAGGAGGTCCGCCGAGTATCTCAACTTGTTTTGAAAAGGGAGCATTCATATATTGATACAGTTGGTATGGGTTGTCTGGAAACTCCAGTGAAGGTCAAGCAATATTTCCTTATTGCCCCACAGGAATCACATTTTCAAATAGTACACCATATTTTGAAGGAGCATGTTATGCAAACACCTGATTATAAGGTTATTGTTTTCTGTGTTGCTGGAATGGTAACATCACTTATGTATCAACTACTACGTGAAATGAAAATGAATGTCAGGGAGCTACACTCTCGAAAACCCCAACTGTATCGAACTCGCATATCGGATGAGTTTCGGGAATCCAAACAACTCATTCTTGTCTCATCTGACGTTTCGTCTCGTGGAATGAATTATCCTGATGTTACTTTAGTCATACAGGTGGGTATTCCTCCTGATCGTGAACAATATATACATCGTCTTGGAAGAACTGGACGGGAAGGCAAAGAAGGTGAAGGCATATTGTTGATGGCTCCATGGGAACAATATTTTTTAGACGAAATCAAGGATCTTCCTCTAGAGAAATTCCCTTTTCCAGATATGCATACAGAGACAAAGCTTAAGATAGAAAATTCCATGGCAAAGATTGATAGCGACGTCAAAGAAGCCGCGTATCATGCTTGGCTGGGATATTACAACTCAATTAGGGAAATTGGGAGGGAGAAGTCCACCATAGCTGAGCTCGCAAACCGGTTTTCTGAATCAATAGGTTTACAAAGGCCTCCTGCCCTCTTTCGAAAAACCGCTCTAAAGATGGGTTTGAAAGACATTCCTGGCATTAGGATCCGTAGATAA 2268 0.4577 MWRLAISERRREFSKLLCTFTVSRNMGGGPRTFPGGVNKWKWKRMHEKRARDKEKRLLEHEKQLYQARIRSQIRSHLAPDNSPATAAATHAPISPTDHIRALANRFMKEGAEDLWNEDDGPLTASSSSPIRRQGSIGSPVDLRKLITGQPNPNSMNSSGNFGQRRGYRSVSEVNSGVGSSKKLAPAGRRRFLRNDSSSSSESESESEDENDSRVNNWDVRKMGSSASLGKHDLKRERRVMPKPYDEGADFAEQVELIKYEINKRKLKQKEMQEYRVQDQESILTQSRFDECGISPLTIKALSSAGYIHMTRVQEASLSVCLEGKDALVKAKTGTGKSAAFLLPAIEAVLKAMGSKSRHHVPPIFVLILCPTRELASQIAAEAKALLKHHDAIGVQTLVGGVRFKVDQKHLESDPCQILVATPGRLLDHIESKSGISVRLMGLQMLVLDEADHLLDLGFRKDVEKILDCLPRQRQSLMFSATIPKEVRRVSQLVLKREHSYIDTVGMGCLETPVKVKQYFLIAPQESHFQIVHHILKEHVMQTPDYKVIVFCVAGMVTSLMYQLLREMKMNVRELHSRKPQLYRTRISDEFRESKQLILVSSDVSSRGMNYPDVTLVIQVGIPPDREQYIHRLGRTGREGKEGEGILLMAPWEQYFLDEIKDLPLEKFPFPDMHTETKLKIENSMAKIDSDVKEAAYHAWLGYYNSIREIGREKSTIAELANRFSESIGLQRPPALFRKTALKMGLKDIPGIRIRR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211651g00010 755 Pfam Helicase conserved C-terminal domain 534 638 IPR001650 -
Stsc211651g00010 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 684 IPR001650 -
Stsc211651g00010 755 SMART helicmild6 558 639 IPR001650 -
Stsc211651g00010 755 Gene3D - 510 734 IPR027417 -
Stsc211651g00010 755 Pfam DEAD/DEAH box helicase 310 488 IPR011545 GO:0003676|GO:0005524
Stsc211651g00010 755 PANTHER RNA HELICASE 227 684 - -
Stsc211651g00010 755 SMART ultradead3 305 518 IPR014001 -
Stsc211651g00010 755 Gene3D - 253 501 IPR027417 -
Stsc211651g00010 755 MobiDBLite consensus disorder prediction 120 134 - -
Stsc211651g00010 755 CDD SF2_C_DEAD 515 647 - -
Stsc211651g00010 755 MobiDBLite consensus disorder prediction 113 238 - -
Stsc211651g00010 755 Coils Coil 43 63 - -
Stsc211651g00010 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 500 IPR014001 -
Stsc211651g00010 755 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 286 314 IPR014014 GO:0003724
Stsc211651g00010 755 MobiDBLite consensus disorder prediction 147 178 - -
Stsc211651g00010 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 656 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211651g00010 Stsc-Chr211651 48968 52437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211651g00010 286 664 Eukaryotic Initiation Factors Gene Family AT3G19760 26.768 7.78e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211651g00010 - - pcin:129284459 1059.67