Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211650g00007 ATGAAATCATCAAGTGCCATGGAAGAAGAAGATGAAGAAGAGCAGCAACAAATGATGGACACAAAGGAGAATCATAACAACAAAAATGAAGGAGGGGTTGGTGGTGTTGGTGTTGGAAGGTCAGATTCAATGTCAGATTGCAGTGAACAGAATGAAGAAGAGGAAGAGACAAAATATAGAAGGAGGAATGGGAAGGGGAACCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGGAGGAAGAAGCTGAATGACAGGCTGTACAATCTTAGATCATTGGTTCCAAGGATATCAAAGCTTGATAGAGCTTCCATTCTTGGTGATGCAATTGAGTTTGTGAAGGACTTGCAGAAGCAGGTGAAGGATCTTCAGGATGAACTTGAGGACAATAATAATAATAATTCAGACATTACTGCTGCTGATAGTAACAATCATCAGTTTCTTGATCATAATCATCATCATAATCATAATTTGGGAGCATCATATATAATCCCAAAGCAGAAGCAGAAGCAGGAAGCAGCAGTGGATGGGAGTGCTGTTACCATGGACAACAAGCACACCCAACAGATGGAGCCGCAAGTGGAGGTGGCAGTGATAGATGGAAAGGAATACTTTGTGAAGGTATTCTGTGAGCACAGAGCAGGTGGGTTTGTGAAATTAATGGAGGCACTCAACACATTAGGCATGGATGTTGTACATGCCACTGTCACCAGCCACAAAGGCCTTGTCTCCAACGTCTTCAAAGTTGAGAAAAAGGACAGTGATATGGTGGAGGCTGAGGATGTGAGGGACTCGTTGCTAGAGCTTACGAGAAGCCCATCATGTAGCAGGGGTGTGTGGACTAACAACAACAACAAGAATAATAATAATAATGGAACATCTGAGAATAATAATGGTGGTCATCACATTCATAATCATAATCATAATCAGAACCACCAGATGGGTGCATATCACCCCCACCCATTTCATACTTAA 972 0.4208 MKSSSAMEEEDEEEQQQMMDTKENHNNKNEGGVGGVGVGRSDSMSDCSEQNEEEEETKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKDLQDELEDNNNNNSDITAADSNNHQFLDHNHHHNHNLGASYIIPKQKQKQEAAVDGSAVTMDNKHTQQMEPQVEVAVIDGKEYFVKVFCEHRAGGFVKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSDMVEAEDVRDSLLELTRSPSCSRGVWTNNNNKNNNNNGTSENNNGGHHIHNHNHNQNHQMGAYHPHPFHT 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211650g00007 323 MobiDBLite consensus disorder prediction 273 313 - -
Stsc211650g00007 323 MobiDBLite consensus disorder prediction 273 323 - -
Stsc211650g00007 323 Coils Coil 8 28 - -
Stsc211650g00007 323 Pfam Helix-loop-helix DNA-binding domain 73 116 IPR011598 GO:0046983
Stsc211650g00007 323 CDD bHLH_AtAMS_like 69 128 - -
Stsc211650g00007 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 115 IPR011598 GO:0046983
Stsc211650g00007 323 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 23 269 - -
Stsc211650g00007 323 SMART finulus 72 121 IPR011598 GO:0046983
Stsc211650g00007 323 MobiDBLite consensus disorder prediction 1 77 - -
Stsc211650g00007 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 130 IPR036638 GO:0046983
Stsc211650g00007 323 CDD ACT_UUR-ACR-like 205 268 - -
Stsc211650g00007 323 Gene3D - 50 133 IPR036638 GO:0046983
Stsc211650g00007 323 Coils Coil 105 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211650g00007 Stsc-Chr211650 33205 34884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211650g00007 39 282 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 53.441 3.40e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211650g00007 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211650g00007 - - aip:107616200 394.815