Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211650g00002 ATGGAATGGGAAAAATGCGGTGCTGATGTTTGGTTTGTCAAAGATTGGAAGAAATTTGCAGAGTTTTATTCTTTGGAAAATGAGCAGGTTTTGATGTTCAAGTATGAAGGGAAGTCACGGTTCAATGTCATAATACTCGGTCGGAGTTGCTTGGAAAGAGAATACCCTTTGTTGAATGAAACTCTTGAAGCTGAAGACGACTCTATGGAAAGGCCAAACTCTCCGTCGCGATGTTCTTCTAAGAAGAGAAGAACTAACACAAAAGAAGAAGCTAGATTGTATTCTAGTCAACACGGTGAAACCAAAGGTGCTCAATCTCGGTGGCCAAGCACTGAGAAGAAGAAATTCAATGCATATTCTGATACTGGAAGGCCAAAAGACACAGGTGGAAGGAGAATCTTCTCAAAATCTGAGGCTTCTAACAATTTTGAGGCACCAAAAGATACTAAAAGTAGCAGTGCTTTGGAGAGAGCCATGGCTTTGGCTTCTAACAATCTTTGGTTCTATCGCGAAATGAAACCAGCGTACCTCAATAACTATCTTCTGTTCAAGAAAGGAGACTTTATAAAACAAGAAGGAAAAGAGGAGAATTTTCTCAGTCTCTGGGTTACTGATGAGAATAAAACATGGGATGCTAAGATCACAAAGGATGATACTACTGGACAGATAATGCTTACTACTGGTTGGAAGGACTTTGTAGAGGCCAACAACCTGAAACTAAATGATGTTTGCATTTTTGAGAAAACTGGAAATTCCAGAGGACTTTTATATAGAGTTATTATCCACCATGCCAAAGAAGAATCAACCCATATTCCATCTCAAGTTACAAACGACGTGGACGTAGCAGCAATTGGACCGGAGATAATCAATTCACCGTCAAATTAA 885 0.3955 MEWEKCGADVWFVKDWKKFAEFYSLENEQVLMFKYEGKSRFNVIILGRSCLEREYPLLNETLEAEDDSMERPNSPSRCSSKKRRTNTKEEARLYSSQHGETKGAQSRWPSTEKKKFNAYSDTGRPKDTGGRRIFSKSEASNNFEAPKDTKSSSALERAMALASNNLWFYREMKPAYLNNYLLFKKGDFIKQEGKEENFLSLWVTDENKTWDAKITKDDTTGQIMLTTGWKDFVEANNLKLNDVCIFEKTGNSRGLLYRVIIHHAKEESTHIPSQVTNDVDVAAIGPEIINSPSN 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211650g00002 294 Gene3D - 147 267 IPR015300 -
Stsc211650g00002 294 SUPERFAMILY DNA-binding pseudobarrel domain 163 262 IPR015300 -
Stsc211650g00002 294 SMART B3_2 168 265 IPR003340 GO:0003677
Stsc211650g00002 294 Gene3D - 1 50 IPR015300 -
Stsc211650g00002 294 ProSiteProfiles B3 DNA-binding domain profile. 1 49 IPR003340 GO:0003677
Stsc211650g00002 294 MobiDBLite consensus disorder prediction 63 149 - -
Stsc211650g00002 294 ProSiteProfiles B3 DNA-binding domain profile. 206 265 IPR003340 GO:0003677
Stsc211650g00002 294 MobiDBLite consensus disorder prediction 117 133 - -
Stsc211650g00002 294 MobiDBLite consensus disorder prediction 82 96 - -
Stsc211650g00002 294 PANTHER B3 DOMAIN-CONTAINING 1 251 - -
Stsc211650g00002 294 MobiDBLite consensus disorder prediction 98 116 - -
Stsc211650g00002 294 SUPERFAMILY DNA-binding pseudobarrel domain 5 56 IPR015300 -
Stsc211650g00002 294 CDD B3_DNA 174 262 IPR003340 GO:0003677
Stsc211650g00002 294 MobiDBLite consensus disorder prediction 134 149 - -
Stsc211650g00002 294 Pfam B3 DNA binding domain 199 254 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211650g00002 Stsc-Chr211650 2576 3831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211650g00002 5 57 B3 DNA Binding Superfamily AT1G49475 49.057 7.91e-10 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc211650g00002 B3 6.4e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211650g00002 - - adu:107467278 347.436