Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211649g00004 ATGGATCCCTCATGCTATAATATTTTCTGCATATTTTTGTTGCTCAATCTTCTAGCATCTATAGTTCCATACAAATTTGTTGTTTCTTCTTCTTCTGCTAGTGATGTTCCAATTAATGTTACCAAACACTTTTTCTTCCCAAATTTCAACTTGAACAACAACCCCAGATTAGTCCATGATTTGAAGCTTCTAGGAAGTGCCAAATTCTCAGATCAAAATGGTGCAATTCAGATCCCAATTGAGTCACAAGACACTGACATAAGGCACCAAGCAGGGAGAGGAATCTACAACTTCCCAATTCGCCTTCTAGATCCAAGAACAAAAACTCCGGCGTCTTTCGAAACCACCTTTGCTTTTCAGCTCAACAATTCAACTTCCTCTGATGAATCCTCCAACGGTGGAAGTGGCTTAACTTTCATCATTGTCCCTGATGAGTTCACAGTTGGAAGATCAGGTCCATGGCTTGCAATGCTCAATGATGTTTGTCAAAATGACTACAAGGCAGTTGCAGTTGAATTTGACACAAGGAAGAACACTGAATTTGGTGATCCAAATGATAACCATATTGGTATCAATTTAGGTACCATAGTATCTACAAAAACTATAAATGTTTCTGATGCTGGTGTTTCTCTTAAGGATGGTTCCGTTCATAGGGCTTGGATCAAATATCATGGTCCTCAAAGGAGGATGGATATTCATCTCGGTCTCCCCGACCGAGATGTTTATCCATCCAAGCCAATCTTCTCAGAATCCATTGATCTTACTCCTTATCTAAATGAGTACATGTTTGTAGGCTTCTCAGCTTCCACAGGTAACCACACTCAAATCCACAACATACTCTCTTGGAATTTCACTTCAACTAGCCAAGCTTTTCTCCGGTTACCGTCCACCGAAACTTGCCAGGGCCAGATCATGCTTCAGAATAGTACTGGAGCTGCACAAGAAGCTGCCACTAAGTCTTCAAAGGATGAACCTTCTAAAAGCTTCTTGATTTTCGTGGCTGCGGTGGCGGCTGTTCTTGTTGTTCTGATTGGTTTCTACTTTGTCAGCAAGCACAGAAGAAATGCTGCCAAATCAAGAAGTCCAATGGATGTAGAGATTCACAGGCCAAGGCCTCCAAACAAGCCGCGCCGCTTCACCTTCTCTGAGATTTCATCAGCAACTCGGTCATATAGTGAAGTTGAGTTGCTTGGCAGTGATTCCAGAGGAGTGTACTACAGAGGGAAGCTTTCCAATGGCACACAGGTTGCTGTGAAGAGATTCTCAGAGCAGTTCCTTGGCACACACGGATCGGATAAGAAGCGTTTGTTGAAAGAAATCAAGACAATCAGCGCGGTTCGCCACCCGAATTTGCTTCCCCTTAGAGGCTGGTGCCAGGACAATCATCAAGTAATGGTGGTTTATGACTTTGTCCCTAATGGAAGCCTAGATAAGTGGCTATTCGGGGCCGGCGTTCTTCCATGGACGCGACGATTCAAGGTCATTAAGGATGTAGCTGATGGCTTGAGTTTCCTCCACGGCAAGCAACTAGCCCACAAGAACTTGAAATGCAGCAGTGTGTTCCTTGATGTCAGCTTCAGAGCAGTGTTGGGGGACTTTGGATTCGTCCTAATGGGGGCCGAATCGAAACAATTCGAGGCTCAAGTGTGCCTGGGTGCAGACGTGTTCGAATTCGGAGTCCTTGTGTTGGAAGTAATAGCAGGAAGGAAAAGGAATGAGAGTGATGAAGGGAAGGCTGAGGAGAAGAACTTGTTGGATTTTGCTTGGAACTTGCATGAGGTTGATGAGAAAGTGAAGATTGTCGATAGAAGAATGGGAACATTGATCAACTTGGAGCAAGCAATTAGAGTTCTTGAGATTGGTTTACTTTGCACTTTGAATGAGAACAAAGGGAGACCATCTATGGAGCAAGTTGTGGAGTTTCTTGGTAACATGGAGAAGCCTATTCCGGAACTTCCAAGAACTCGCCCTGTTGCATTGTTCCCTTATAGTAGTGCCAATACTGGACTTTGCAATGCTTATTCTTGTACTTTTTAG 2037 0.4374 MDPSCYNIFCIFLLLNLLASIVPYKFVVSSSSASDVPINVTKHFFFPNFNLNNNPRLVHDLKLLGSAKFSDQNGAIQIPIESQDTDIRHQAGRGIYNFPIRLLDPRTKTPASFETTFAFQLNNSTSSDESSNGGSGLTFIIVPDEFTVGRSGPWLAMLNDVCQNDYKAVAVEFDTRKNTEFGDPNDNHIGINLGTIVSTKTINVSDAGVSLKDGSVHRAWIKYHGPQRRMDIHLGLPDRDVYPSKPIFSESIDLTPYLNEYMFVGFSASTGNHTQIHNILSWNFTSTSQAFLRLPSTETCQGQIMLQNSTGAAQEAATKSSKDEPSKSFLIFVAAVAAVLVVLIGFYFVSKHRRNAAKSRSPMDVEIHRPRPPNKPRRFTFSEISSATRSYSEVELLGSDSRGVYYRGKLSNGTQVAVKRFSEQFLGTHGSDKKRLLKEIKTISAVRHPNLLPLRGWCQDNHQVMVVYDFVPNGSLDKWLFGAGVLPWTRRFKVIKDVADGLSFLHGKQLAHKNLKCSSVFLDVSFRAVLGDFGFVLMGAESKQFEAQVCLGADVFEFGVLVLEVIAGRKRNESDEGKAEEKNLLDFAWNLHEVDEKVKIVDRRMGTLINLEQAIRVLEIGLLCTLNENKGRPSMEQVVEFLGNMEKPIPELPRTRPVALFPYSSANTGLCNAYSCTF 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211649g00004 678 SUPERFAMILY Protein kinase-like (PK-like) 371 642 IPR011009 -
Stsc211649g00004 678 ProSiteProfiles Protein kinase domain profile. 391 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211649g00004 678 PANTHER - 81 644 - -
Stsc211649g00004 678 SUPERFAMILY Concanavalin A-like lectins/glucanases 43 288 IPR013320 -
Stsc211649g00004 678 CDD lectin_legume_LecRK_Arcelin_ConA 60 287 IPR001220 GO:0030246
Stsc211649g00004 678 Gene3D - 41 287 - -
Stsc211649g00004 678 FunFam Lectin-domain containing receptor kinase A4.2 471 650 - -
Stsc211649g00004 678 Pfam Protein tyrosine and serine/threonine kinase 396 536 IPR001245 GO:0004672|GO:0006468
Stsc211649g00004 678 Gene3D Phosphorylase Kinase; domain 1 363 470 - -
Stsc211649g00004 678 Gene3D Transferase(Phosphotransferase) domain 1 471 651 - -
Stsc211649g00004 678 FunFam Putative L-type lectin-domain containing receptor kinase S.7 isoform A 41 294 - -
Stsc211649g00004 678 ProSitePatterns Legume lectins beta-chain signature. 169 175 IPR019825 -
Stsc211649g00004 678 Pfam Legume lectin domain 43 290 IPR001220 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211649g00004 Stsc-Chr211649 9539 11829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211649g00004 48 661 Receptor kinase-like Gene Family AT5G55830 31.019 2.77e-91 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc211649g00004 Lectin_legB 1.4e-55 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211649g00004 - - gmx:100781464 1077.77