Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211648g00001 ATGATCGGCCATAAGAGTACGGAGGGGAGTTGGAGTAACTCGAACCAGAATTCTCATTCAATCTTTGTGGATAATCTACCTGTGAACATTTCGAAGAGATTCCTCTATCGGGAATTTGGGTTCCATGGTCAGGTGACTGATGTATTCATATCCAGAAAGCCACGTGAAGGGAAGAATAGTGTCTTTGCATTCATAAGATATGACTCACGGGGTGGAGCAGTAAGGGCTATGGAAAAACTAAATGGTACATTCATAGCTGGTAAGGAAATTGTAGTTAAAGATGCTCTGGCTCGTGGAGCTAGAACCCAAAAGATGAGATGGAAATGGGTGAGAAAGGAAAGCGGTACAAAGGCAATACCAGAGGCTGATAACGTTGAGAGAGATATGGAACACTCAAACCCAAAAGTGGTAACTAAGAGTATGAAAGCGGTGGAGGTGGAGGTGAAGGTGTCGGAAGAGCAGAGTGAGTTACTAAATAGGAGCATCATTGCTGAGTGCTTTAAGCCGATTAAGTTCGGCATCGTTGTTGAACAATTTGATAAACTTGAACTGCAGTATGGTAAGATTGAATGTAGAGACTTCGGACCGAAGAAATGCATCCTGTCTATGGATTCAGTTGAGCTAAGAGACAGAGCTCTAGCTGAATCAATATTTACGGGCATTTTTGATGAGGTGAGAAGTTATTGGGGTTAA 693 0.4257 MIGHKSTEGSWSNSNQNSHSIFVDNLPVNISKRFLYREFGFHGQVTDVFISRKPREGKNSVFAFIRYDSRGGAVRAMEKLNGTFIAGKEIVVKDALARGARTQKMRWKWVRKESGTKAIPEADNVERDMEHSNPKVVTKSMKAVEVEVKVSEEQSELLNRSIIAECFKPIKFGIVVEQFDKLELQYGKIECRDFGPKKCILSMDSVELRDRALAESIFTGIFDEVRSYWG 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211648g00001 230 Gene3D - 3 108 IPR012677 -
Stsc211648g00001 230 CDD RRM_SF 21 93 - -
Stsc211648g00001 230 SUPERFAMILY RNA-binding domain, RBD 11 106 IPR035979 GO:0003676
Stsc211648g00001 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Stsc211648g00001 230 SMART rrm1_1 20 93 IPR000504 GO:0003723
Stsc211648g00001 230 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 90 IPR000504 GO:0003723
Stsc211648g00001 230 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 3 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211648g00001 Stsc-Chr211648 7396 8088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211648g00001 7 109 Eukaryotic Initiation Factors Gene Family AT1G34140 31.068 3.74e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211648g00001 K12891 - ahf:112794598 155.992