Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211647g00003 ATGGAACAGCTGATATTGGCTTCAGAATCTGACATCAAAGAGGTCTCCTCTTTGAGGCCAAAGCCAAAAAATAATGATGCACCCGAGCCTCCTGGAAGTCCTAGAAGCAGAAAGGTCTCTGCTAGATGGGATCCAGCTGAGGCATGCCGACCCATGATTGATGAAGCACCCATGTTCTATCCTACTATTGAGGAATTTGAAGACACACTTGGCTACATAGCAAAGATACGCCCCCAAGCTGAACCCCATGGAATATGCAGGATTGTCCCTCCTGCTTGCTGGGTGCCACCTTGCCCTCTGAAGGAGAAAGAAATCTGGGAAAATTCTAAATTTTCCACCCGTATTCAGCAGATTGATTTGCTTCAAAATAGGGAGCCCATGAAAAAGAAAAAAAGGGGAAGGAAACGGAAACGTAGAAATCACTCCAAAATGGGCACCTGCAGGAGACTCCCCAATTCAAGTTCAGGAGCTAATAATGCTTCTGAACCTGATGAGAAATTTGGATTCCAATCAGGGTCAGACTTCACATTTAAAGACTTTCAGCAGTATGCTAATTATTTTAAGGAATGCTACTTTCGGTTGAAAGATCCTGATGAAGATGAAAAGTCTAGCAATAATAGATGGGAGCCCTCGGTGGACGTAATTGAAGGTGAATATTGGCGAATAATTGAGCAACCAACTGATGAGGTCGAGGTGTATTATGGTGCAGACTTGGAAACTGGATCTGTCGGAAGTGGTTTTCCCAAATCACCATCCTTAACTAAGAGTGACTCAAATCAATATGCCCTCTCTGGTTGGAATCTAAATAATTTTGCACGACTACCAGGTTCTGTACTTAGTTTTGAAGGAAGTGACATCTCAGGAGTTCTTGTGCCATGGCTATATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCTCTTAATTACTTGCACTGGGGCGACCCAAAAGTATGGTATGGGGTACCTGGAAGCCACGCTTCAGCACTGGAAAATGCAATGAGGAAGCACTTACCTGATTTATTTGAGGAACAGCCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCTTCGATTCTTAAATCTGAGGGTGTGCCTGTATATCGTACTGTCCAGCATTCTGGGGAGTTTGTTATTACTTTTCCAAGGGCATACCACTCCGGCTTCAATTGCGGCTTCAACTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGCTAATGCATGGCCAGAATGCTGTTGAGCTTTATAGTTTGCAGGGCCGTAAGACATCCTTGTCGCATGACAAGCTGTTATTTGGATCAGCACAGGAAGCTGTACTGGCCCTCGCAGAACTAGCTCTTCATGGAAAAGAAACTCCAAAATGTTTGAAATGGAGAAGTGTCTGTGGGAAAGACGGAGTTCTAACAAAGGCCATTAAGACAAGGATACAGATGGAAGAAGAGAGGCTGGGATGTCTTCCAACACATTTAAAGTTGCTAAAGATGGACAAAAACTTTGATTCTTATGATGAAAGAGAATGCTTTTCTTGCTTCTATGACTTGCACTTATCTGCTGTGGGATGTGAGTGCTATAGGGACAAATATTCTTGTCTTAAGCACTCAAAGTTGTTATGCTCTTGCGCAATGGAGAAAAGATTTGTTCTTTTTCGTTATACGATAGATGAACTTAAATCTTTGGTTGAAGCATTAGAAGGAGAGTCACGTGCTATTGAGGTGTGGGTAAATAAAAGGCTTGGAATATCTACTGTTGCCAATGAGGTTTGCATGTATGAATCAGATGTGGAGAAAGACATGTATGAAGCGAAGAATCACAAAGAGGAGGAGACCTCAAGAATAGAAACCATGAATAACTCAAATTTAAATACAGCTAGCAGGCCTCATAGTCATGTTGCATCAGAGATAGTTCAGTCGGAGTCTCACGATGTAACTTCTGGTACATCATATTTCATTATAGAAAATCATAATCATAGTATTGATAAGAAGTTGGCCGCAGATAATGGACATAAAGTGGATCAGGCAGATTCTTTGGATTTGAATCTTGAAGCTGTATCTGATGGAAATGAAAACAATTTGCTGCTTGAGGGTTCCTCAATAGAGGAAAAATTATGTTGCTCAGGCTCTGGAAAGAAACAAGAAAACATAGGGCTTGTTGGCAAGAATAACCTATCACACTTGTGTGTTCTGCAGACAGAACTTTCGTCATGTTCAATGGATGTTCACTATTCTGGTCCATCTAATGGCAGGAAATTTGGGATAGATTCAAATTCTGGAAGGCAGCCTAACAGCATGGTTAAAAGGGAAATCATCGACACCGTGAATAGAAGTATATCTTCAAGTGATGAAAGCTCTCTAATGCAAGTGTTTGGTATTACTGTGAAGCTTATAAGTTTGGGATCTGTATCTTATGGAAAGCTGTGGTGCACTAAGCAAGCAATATATCCAAGAGGATTCAAGAGTCAAGTTAGCTTCTTTAGCGTTCTTGATCCAGCAAGAATATGTAGCTATACTTCTGAAGTTGTTGATGCTGGATTTCTTGGCCCTCTATTCAAGGTTACCATGGAAGATCCCAATGAGGTTTTCACTGATACCACGGCAGACAAGTGCTGGGAATCAATTCTAAAGAGACTACATGATGAAATCATAAGGCGAAGGAGTCTAGGTGAACTAGAACTTCCTCCCATGGAGCTTTTGAAAAGCATCAATGGTCATAGAATGTTTGGCTTCCATTTGCCATCTGTTATTCAGGCCATTGAAGCTCAAGATGTCACTCATCAGTTTGATGAGTACTGGAACCACAGATGTGTCCTCACTGACCTCACATCATTGGATGGCGCGATTAAAAAGTTCAAAGATGGTTCAGGCAGTTCTTCAGGTAATGGCAATACCAAAGTTTTTGGCATCAATTTAATTAAGCAGGAAGATGATGACATAGGTGGAAGTTGTCATTCCCTTGGAGAGAAGCAATTGATATTACAGGGATTGCTAAAAAGGGCAAGTTCTGATGAGTTAAGCGCGATACATAAGTTATTCAGCTCGGACGCGTTGTGTTCGCAGTGGAGAATGACATTCTTAGTCCTAATGGAGGAGATAAATAAAGCTGGTAGATAA 3135 0.4153 MEQLILASESDIKEVSSLRPKPKNNDAPEPPGSPRSRKVSARWDPAEACRPMIDEAPMFYPTIEEFEDTLGYIAKIRPQAEPHGICRIVPPACWVPPCPLKEKEIWENSKFSTRIQQIDLLQNREPMKKKKRGRKRKRRNHSKMGTCRRLPNSSSGANNASEPDEKFGFQSGSDFTFKDFQQYANYFKECYFRLKDPDEDEKSSNNRWEPSVDVIEGEYWRIIEQPTDEVEVYYGADLETGSVGSGFPKSPSLTKSDSNQYALSGWNLNNFARLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASALENAMRKHLPDLFEEQPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQGRKTSLSHDKLLFGSAQEAVLALAELALHGKETPKCLKWRSVCGKDGVLTKAIKTRIQMEEERLGCLPTHLKLLKMDKNFDSYDERECFSCFYDLHLSAVGCECYRDKYSCLKHSKLLCSCAMEKRFVLFRYTIDELKSLVEALEGESRAIEVWVNKRLGISTVANEVCMYESDVEKDMYEAKNHKEEETSRIETMNNSNLNTASRPHSHVASEIVQSESHDVTSGTSYFIIENHNHSIDKKLAADNGHKVDQADSLDLNLEAVSDGNENNLLLEGSSIEEKLCCSGSGKKQENIGLVGKNNLSHLCVLQTELSSCSMDVHYSGPSNGRKFGIDSNSGRQPNSMVKREIIDTVNRSISSSDESSLMQVFGITVKLISLGSVSYGKLWCTKQAIYPRGFKSQVSFFSVLDPARICSYTSEVVDAGFLGPLFKVTMEDPNEVFTDTTADKCWESILKRLHDEIIRRRSLGELELPPMELLKSINGHRMFGFHLPSVIQAIEAQDVTHQFDEYWNHRCVLTDLTSLDGAIKKFKDGSGSSSGNGNTKVFGINLIKQEDDDIGGSCHSLGEKQLILQGLLKRASSDELSAIHKLFSSDALCSQWRMTFLVLMEEINKAGR 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211647g00003 1044 Gene3D - 794 934 - -
Stsc211647g00003 1044 SMART cupin_9 263 426 IPR003347 -
Stsc211647g00003 1044 MobiDBLite consensus disorder prediction 146 165 - -
Stsc211647g00003 1044 ProSiteProfiles FYR domain FYRN motif profile. 793 851 IPR003888 GO:0005634
Stsc211647g00003 1044 SMART fyrc_3 857 945 IPR003889 GO:0005634
Stsc211647g00003 1044 Pfam JmjC domain, hydroxylase 293 409 IPR003347 -
Stsc211647g00003 1044 ProSiteProfiles FYR domain FYRC motif profile. 853 942 IPR003889 GO:0005634
Stsc211647g00003 1044 Pfam F/Y rich C-terminus 855 941 IPR003889 GO:0005634
Stsc211647g00003 1044 SMART JmjN_1 55 96 IPR003349 -
Stsc211647g00003 1044 Gene3D Cupin 41 410 - -
Stsc211647g00003 1044 PANTHER LYSINE-SPECIFIC DEMETHYLASE 50 752 - -
Stsc211647g00003 1044 MobiDBLite consensus disorder prediction 124 165 - -
Stsc211647g00003 1044 Pfam jmjN domain 57 90 IPR003349 -
Stsc211647g00003 1044 MobiDBLite consensus disorder prediction 127 145 - -
Stsc211647g00003 1044 SUPERFAMILY Clavaminate synthase-like 171 445 - -
Stsc211647g00003 1044 ProSiteProfiles JmjC domain profile. 263 426 IPR003347 -
Stsc211647g00003 1044 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Stsc211647g00003 1044 MobiDBLite consensus disorder prediction 1 43 - -
Stsc211647g00003 1044 Pfam C5HC2 zinc finger 516 568 IPR004198 -
Stsc211647g00003 1044 SMART fyrn_3 807 851 IPR003888 GO:0005634
Stsc211647g00003 1044 Pfam F/Y-rich N-terminus 801 848 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211647g00003 Stsc-Chr211647 9768 16317 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211647g00003 64 1033 JUMONJI Transcription Factor Family AT4G20400 46.782 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc211647g00003 JmjC 8.8e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211647g00003 K11446 - gmx:100801775 1442.94