Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211646g00002 ATGAGTTGTGGCTGCTTTGGAGCCTCAACTCTCAAGAAGAAAAGTCCTTCTCATACTCCCAACGAAATTGACGGCTATCCACTTGATAATGTTAAACATTTCTCTGACAAAGAACTGAGATTGGCTACTGATAATTATCATCCAAGCAATAAGCTAGGACGAGGAGGTTTTGGAACTGTTTACAAGGGAACCTTAAAAGACGGGAGTCAAGTAGCAGTGAAGACCCTTTCAGCTGGGTCAAGGCAAGGAGTTCGTGAATTTTTAACCGAGATTAAAACTATATCAAATGTTAAGCATCCAAACCTAGTTGAATTGGTCGGTTGCTGCATTCAAGGACCTAATCGGATACTAGTCTACGAGTATGTGGAAAATAACAGCCTTGATCGTGCATTACTTGGCACAAGGGGTATAAACATAAGACTAGACTGGAGAAAAAGATCTATTATTTGCATGGGCACTGCTAGGGGTCTTGCATTTCTTCATGAAGAACTTGTGCCACACATTGTGCACAGAGACATCAAAGCCAGCAACATACTGCTCGATAGAGACTTCAATCCAAAAATAGGAGATTTTGGGTTAGCTAAATTATTTCCAGATGACATCACTCATATTAGCACAAGAATTGCTGGAACAACTGGTTACTTGGCACCTGAATATGCAATTGGTGGCCAGTTAACTCTGAAGGCTGATGTATATAGTTTTGGAGTTCTTATACTTGAAATAGTTAGTGGCAGAAGCAGTTCAAGGACAAACTGGGGAAACTCATACAAACTCCTCTTGGAATGGGTACATGCATTTCACAGCATCCCGTATTTACAGTTTACTTGGCAACATCATGAATTTTTATTTCTGCTCTGA 858 0.4033 MSCGCFGASTLKKKSPSHTPNEIDGYPLDNVKHFSDKELRLATDNYHPSNKLGRGGFGTVYKGTLKDGSQVAVKTLSAGSRQGVREFLTEIKTISNVKHPNLVELVGCCIQGPNRILVYEYVENNSLDRALLGTRGINIRLDWRKRSIICMGTARGLAFLHEELVPHIVHRDIKASNILLDRDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYAIGGQLTLKADVYSFGVLILEIVSGRSSSRTNWGNSYKLLLEWVHAFHSIPYLQFTWQHHEFLFLL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211646g00002 285 Pfam Protein kinase domain 46 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211646g00002 285 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 266 - -
Stsc211646g00002 285 SMART serkin_6 46 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211646g00002 285 Gene3D Transferase(Phosphotransferase) domain 1 122 278 - -
Stsc211646g00002 285 Gene3D Phosphorylase Kinase; domain 1 18 121 - -
Stsc211646g00002 285 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Stsc211646g00002 285 PIRSF ILK 8 256 - -
Stsc211646g00002 285 ProSiteProfiles Protein kinase domain profile. 46 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211646g00002 285 FunFam cold-responsive protein kinase 1 17 121 - -
Stsc211646g00002 285 FunFam Os07g0541700 protein 122 211 - -
Stsc211646g00002 285 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524
Stsc211646g00002 285 SUPERFAMILY Protein kinase-like (PK-like) 31 267 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211646g00002 Stsc-Chr211646 11982 15497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211646g00002 31 267 Receptor kinase-like Gene Family AT1G53420 58.650 1.56e-90 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc211646g00002 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211646g00002 - - gmx:100788143 481.485