Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211644g00012 ATGACAGATTCTGCCTACAAGGTTGACACCACCTCACGCCTTGCTCAATGGAGAATCGACAACTTAGCCTCCTGCACTTACCGCAAATCCGATCCTTTCAAGATCGGCAAATGGAACTGGCATTTGTCCGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTACCCAGAAATTTCGAATCTGACACGAGATAACCCCCCAATTGCGTCTTTCATCATTAGGGTGGTTAGTTCTGTTGGAGATCGCAAGTACCTCACTCATCCAGAGATAAGAGATAAAGTGATAAAGAGCAACGATGACTTTGTTTGGGCAATTGAGGTTCCACTAACTGGCAAATTCATCATTGACGTTGAGTTTCTTGATTTGAAGACTGCATCCCCAAACGGTGAAGAACCTTGTTCTATCTGGGCGGGTGGTTTTACTCAGCAAAGATCAAATGCGACGGCGCTCGACACTCTTGGTAAAATGCTAACAGAAGGGATTCACACAGACATAACCATCAATGCTGCGGACGGAAGCATAGGAGCTCACAGGGCAGTTCTAGCTGCCCGGTCGCCTGTGTTTCGCAGCATGTTTTCGCATAATCTAAAGGAGAAAGAGCTTTCAACTGTCAACATCCAAGACATGTCGATTGAAGCTTGCCAGGCACTTCTAAATTATCTCTATGGGATCATCAAGAACGACGAGTTCTTGATGCATAGATTAGCCCTTTTACATGCTGCTGATAAGTATGACATATCAGACCTCAGAGAAGCATGTCATGAGAGCCTTCTAGAAGACATTGACACGAAGAATGTCCTCGAGAGGCTCCAGAATGCTTCTCTGTTTAGGCTGATGAAGCTGAAGATGACCTGCATTAGATATCTCGTGAAATTCGGTAAGGTGTTCGAGATTCGTGATGATTTCAATTGCTTCTTGCAAAATGCAGATAGGGATTTGATTGCTGAAGTCTTCCATGAAGTTCTTGATGCATGGAAAGGATTCTGA 987 0.4417 MTDSAYKVDTTSRLAQWRIDNLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLYPEISNLTRDNPPIASFIIRVVSSVGDRKYLTHPEIRDKVIKSNDDFVWAIEVPLTGKFIIDVEFLDLKTASPNGEEPCSIWAGGFTQQRSNATALDTLGKMLTEGIHTDITINAADGSIGAHRAVLAARSPVFRSMFSHNLKEKELSTVNIQDMSIEACQALLNYLYGIIKNDEFLMHRLALLHAADKYDISDLREACHESLLEDIDTKNVLERLQNASLFRLMKLKMTCIRYLVKFGKVFEIRDDFNCFLQNADRDLIAEVFHEVLDAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211644g00012 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
Stsc211644g00012 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Stsc211644g00012 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Stsc211644g00012 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Stsc211644g00012 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Stsc211644g00012 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Stsc211644g00012 328 Pfam BTB/POZ domain 155 259 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211644g00012 Stsc-Chr211644 71154 74213 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc211644g00012 BTB 9.1e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211644g00012 K10523 - gmx:100790186 600.127