Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211643g00002 ATGAAAGAGGAGCAGAGCGCGAAAAACGAGGACCGTAACGGTGACGGTAACGGTGAGGAAGTGATTAGGTGGGAGAAGATTCTGGCGCGGAGGGTGGTTAGGGTTTTGGTGGTTGAAGCGGATCACTCTACCCGCCACCTCATCACTGCTATTCTTCGAAAATGCAGTTATTCAGTTATTGCTGTTTCTGATGGATTAAAGGCATGGGAAGTCTTGAAGAAGAAGGCAACAGACCTAGATCTCATATTAACAGAAGTGGATTTGCCCGCAATATCCGGATTTGCACTCATTACTTTAATCATGGAGCATGATTTTTGCAAAAACATTCCTGTCATAATGATGTCCTCTCAAGATTCGGTTAACATGGTGTTGAAATGCATGCTAAAAGGGGCAGTTGATTTTCTTATAAAACCGGTCCGGAGGAATGAGCTTAAGAACTTATGGCGGCATGTATGGAGAAGGCACACAATTGACAAGCCTCCTCAAAATACGGCATTTCCAGCTGAAAAACTTAAGACTGTTTCGCAAGACAATTCTACAAGCAATCAGTCTAGTGATTTTGTATCTTCTTCGCAAGAAAATAATGGACGTGGCGAAAATTTGAGTGAGGCTCATAGCACTTGCACTTCGTCATTTTTGGAAGCAGAGAACACATGCATGGAAAAACAGCAAGATGCATCTGAGTTGAAATTGAGCAATGTTGATGTGGTGCACCATGAGGTGTCCATCAACCATGAAAGTAAATTAAAGAGATCAGTGGAACTTGTATCAGAGTCTGCAAGCCACAACAAATCTCCTAAATCAACAGATTTAAGGATAGGACAAGACCATTGTTTTGCTGAAACCAAAAGCCAAGATGAAGTTCTAAGAGCTGAATCAAGCAGAGCCAACCCTAATATTAATGCTGGGATTCATGGTTGTAGCGGTTCAGTAGTGGAGCCCTCTAGAGGAGCTACTGACTTGATGATTGGCACATTTGAGAATGTCGAAAAGCCTACCATTGAAAACTGTAATTCTAGTGGTGATAATACAACCAAGTCTGTTTCAGATTCAAAAATGGAACTTTCGTTCAGAAGAGACCTTTCTGATAGGTCATGTAAACAAACAAGTGCGATAACTGAGGAAAGGCAAAGATTGAAACATTCAGACACGTCAGCCTTTTCTAGGTACGGTGGTCATAAATTGTTGCAGCCTTCTTCCCCGACACCTTTAATTACCTCCACCAAAGTAACCAACAATGATCAAAATTCTCAAGAATCTCATAAGTCATCTGGAAATACTCTTGATACTTCTTGTCAGTATAGCGGCACAAGCAAAAAAAATGAAGAGAACAGGATAACTCTGGTCGTTGGTCAGTATGGACAATTTGAACCGAATTCATCGACCAATGGATATGGACTCTTGACTGTCAGTAAGGCTACTTCTGATGTTAAGTCAAAGGAACATTGTAACATTTTATCTGCTGGTCAGAATTCGGGTAATAGTTTATCTTCTGATGCTGCAAAACATAAAAGTAGTATTGCCTATGAAAGTGTAGGCAGTGGAAGTGATGGAAATGACACTTCAAATGCGGTAGTCAAGAACAATCCTGAAAATTTTAGTGATAATGTTCACCAAAACTATGATGGATTTAGAGGAGCAAACTCTCATCACTTTAGTCAAAGACAAGCAGCCCTAACAAAGTTTCGACTGAAGCGAAAAGAGAGATCCTATGGGAAAAAGGTTCGATATGAAGCCAGGCAAAGATTGGCAGAGCAGCGCCCTCGAGTGAAAGGGCAGTTTGTCCGTAAAGTACGAGATGGTGATCCAGTACCTGACACCGGTGGTGACTCGTAA 1836 0.4145 MKEEQSAKNEDRNGDGNGEEVIRWEKILARRVVRVLVVEADHSTRHLITAILRKCSYSVIAVSDGLKAWEVLKKKATDLDLILTEVDLPAISGFALITLIMEHDFCKNIPVIMMSSQDSVNMVLKCMLKGAVDFLIKPVRRNELKNLWRHVWRRHTIDKPPQNTAFPAEKLKTVSQDNSTSNQSSDFVSSSQENNGRGENLSEAHSTCTSSFLEAENTCMEKQQDASELKLSNVDVVHHEVSINHESKLKRSVELVSESASHNKSPKSTDLRIGQDHCFAETKSQDEVLRAESSRANPNINAGIHGCSGSVVEPSRGATDLMIGTFENVEKPTIENCNSSGDNTTKSVSDSKMELSFRRDLSDRSCKQTSAITEERQRLKHSDTSAFSRYGGHKLLQPSSPTPLITSTKVTNNDQNSQESHKSSGNTLDTSCQYSGTSKKNEENRITLVVGQYGQFEPNSSTNGYGLLTVSKATSDVKSKEHCNILSAGQNSGNSLSSDAAKHKSSIAYESVGSGSDGNDTSNAVVKNNPENFSDNVHQNYDGFRGANSHHFSQRQAALTKFRLKRKERSYGKKVRYEARQRLAEQRPRVKGQFVRKVRDGDPVPDTGGDS 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211643g00002 611 Pfam CCT motif 555 597 IPR010402 GO:0005515
Stsc211643g00002 611 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Stsc211643g00002 611 ProSiteProfiles CCT domain profile. 555 597 IPR010402 GO:0005515
Stsc211643g00002 611 MobiDBLite consensus disorder prediction 399 439 - -
Stsc211643g00002 611 MobiDBLite consensus disorder prediction 584 611 - -
Stsc211643g00002 611 SMART REC_2 33 148 IPR001789 GO:0000160
Stsc211643g00002 611 SUPERFAMILY CheY-like 34 160 IPR011006 -
Stsc211643g00002 611 PANTHER TWO-COMPONENT RESPONSE REGULATOR 33 282 IPR045279 GO:0009736
Stsc211643g00002 611 Gene3D - 33 297 - -
Stsc211643g00002 611 MobiDBLite consensus disorder prediction 510 537 - -
Stsc211643g00002 611 MobiDBLite consensus disorder prediction 389 439 - -
Stsc211643g00002 611 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Stsc211643g00002 611 MobiDBLite consensus disorder prediction 159 207 - -
Stsc211643g00002 611 MobiDBLite consensus disorder prediction 168 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211643g00002 Stsc-Chr211643 12501 15781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211643g00002 352 599 Response Regulator Gene Family AT5G24470 31.071 2.46e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Stsc211643g00002 Response_reg 3.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211643g00002 K12130 - gmx:100809490 560.066