Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211642g00008 ATGGAAGAAAAAGATATCTTTGGTTCTGGGCATGCGGTTAAGGCTGATGAGGCTCCAGCGAGCTTCCACGTGGCACCGAGAAGTGAAAATATACAGTTTTCCGCGCCCACGGCGGAGCCGCCACCGCAGCCGGTGGTTCCGGGCACTGCTATGGTGGCAGTGACACCGACGACGGGGACGGATGGGAAGAAGAAGAGAGGAAGGCCTAGAAAGTATGGACCGGATGGCAAGTTGACGCCGGAGGCGGCGGCGAAGGCGCTGTCACCGATGCCGATATCGGCGTCGATTCCGTTGACCGGAGAGTTCTCAGGGTGGAAAAAGGGTAGAGGAAAGGCTGTTGAATCAATGAAGAAGTCTTATAAATTTTTTGAGGCTGAAAATGCTGGAGGACCAGGTAATGGAATTGCATACTCAGTTGGTGCCAACTTCACACCACACATTCTTACAGTAAATGCTGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAAGACGGATCCCGCGCCATATGCATTCTCTCTGCCAATGGCACAATTTCAAATGTTACGCTCCGTCAACCAACTTCTTCCGGCGGTACTTTAACATACGAGGGACGCTTCGAGATTCTTTCCTTGTCTGGCTCGTATATGCCAACCGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGACGGTCGAGTAATGGGAGGAGGACTTGCAGGTTTGCTGGTTGCTGCAGGTCCTGTTCAGGTTGTTGTTGGTAGTTTCATTCCAGGTCACCAGCTAGAACAACATAAACAAAAGAAGCAAAGAGTGGAACATCATAATATATCATCTACTGTATCTCCTACACTTAATGTTCCAACTATTTCTGCTGAAGAAATGAAGATAAGTCTCGGCGGAGTGAAGCCTTTCATGACACCCCCTTCTGTTCCTTTTCAAGTCGAAAACAATCCTCCCGGTTTCGTCAATGGCCAATGTTCTTTGAACTCATCTGGTGACGACGACGAAGAAGAAGATGCTTCTTTGCATGAGAAAGAATCTAATCCTAGTCTTTCAGATCCTGCTGGAGTCGCATGCTAA 1089 0.4885 MEEKDIFGSGHAVKADEAPASFHVAPRSENIQFSAPTAEPPPQPVVPGTAMVAVTPTTGTDGKKKRGRPRKYGPDGKLTPEAAAKALSPMPISASIPLTGEFSGWKKGRGKAVESMKKSYKFFEAENAGGPGNGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQDGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFIPGHQLEQHKQKKQRVEHHNISSTVSPTLNVPTISAEEMKISLGGVKPFMTPPSVPFQVENNPPGFVNGQCSLNSSGDDDEEEDASLHEKESNPSLSDPAGVAC 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211642g00008 362 MobiDBLite consensus disorder prediction 266 287 - -
Stsc211642g00008 362 MobiDBLite consensus disorder prediction 319 333 - -
Stsc211642g00008 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 38 326 IPR039605 GO:0003680
Stsc211642g00008 362 MobiDBLite consensus disorder prediction 25 78 - -
Stsc211642g00008 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Stsc211642g00008 362 MobiDBLite consensus disorder prediction 312 362 - -
Stsc211642g00008 362 FunFam AT-hook motif nuclear-localized protein 1-like 145 276 - -
Stsc211642g00008 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 263 - -
Stsc211642g00008 362 ProSiteProfiles PPC domain profile profile. 140 285 IPR005175 -
Stsc211642g00008 362 CDD DUF296 144 258 IPR005175 -
Stsc211642g00008 362 Gene3D - 145 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211642g00008 Stsc-Chr211642 53168 57698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211642g00008 45 274 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 62.712 9.95e-92 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211642g00008 - - gmx:102667678 412.149