Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211642g00003 ATGATCATCATTGGTGTAGACTTGGACACAATTTGCGGAACATATGAAGAAGGCACCAAATTCTCCAATGCCTTTGATGAAGCAAATGCGATAACCCTGTACCGGTATGCTGACATTTTCTGGAAGATCAAGCGGTTCCTCAACATTGGATTGGAAGCAGTGCTGAGAAACCGTATTAAAGTTGTTAATGATTTTATTTATAAACTTATCAGAAGCAAGACTGAGCAACTCAAAAAGCCTCAACATATGGTGAAAGCAGATTTGGTGTCAAGGTTTATGGAATTGGAAGAGAAAGATCCAAAGTACCTAAGAGACATTCTCCTCAGCTTCATAATTGCAGGAAGAGACACAACAGCTACTACCCTTTCCTGGTTACTTTACTTGCTCTGCAAGCATCCTCATGTCCAAGAAAAAATTGCACATGAAGTTGGAGATATCACAAAGTTGAACAACACTTGTAATATTGATGAAATTACAAAAGCCATAACAGAAGAGACTCTTCAAAAGATGCATTATTTGCATGCTGCTTTGTCTGAGACACTTAGACTCTACCCTCCTGTTTCTCTGGATGGCAAACAATGTTTATCAGATGAAACTCTGCCTGATGGATTCAGTGTCAAGAGAGGTGACAATGTATCTTATTTACCATATGCCATGGGCAGGATGGAATCCCTATGGGGCCGTGATGCCGCGGAATTCCGTCCTGACAGATGGCTTCATGAGAATGGAACTTTCCAACATCAGAGTCCTTTCAAGTTCACAGCCTTTCAGGCAGGACCAAGAATATGTCTGGGAAAAGATTTTGCTTATAGACAGATGAAATTTTTTGCTGCTGTTCTTTGTCATAGCTACGAATTCAAGCTTGCTTTCGAAAATAAACAAGTTAATTATATTGTTATGCTCACTCTGCAAATTGATGGTGGTCTTCACATACATGCCTCCCATAGATAG 951 0.3996 MIIIGVDLDTICGTYEEGTKFSNAFDEANAITLYRYADIFWKIKRFLNIGLEAVLRNRIKVVNDFIYKLIRSKTEQLKKPQHMVKADLVSRFMELEEKDPKYLRDILLSFIIAGRDTTATTLSWLLYLLCKHPHVQEKIAHEVGDITKLNNTCNIDEITKAITEETLQKMHYLHAALSETLRLYPPVSLDGKQCLSDETLPDGFSVKRGDNVSYLPYAMGRMESLWGRDAAEFRPDRWLHENGTFQHQSPFKFTAFQAGPRICLGKDFAYRQMKFFAAVLCHSYEFKLAFENKQVNYIVMLTLQIDGGLHIHASHR 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211642g00003 316 PRINTS P450 superfamily signature 175 186 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS P450 superfamily signature 263 274 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS P450 superfamily signature 113 130 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS P450 superfamily signature 254 263 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PANTHER CYTOCHROME P450 2 309 - -
Stsc211642g00003 316 Pfam Cytochrome P450 14 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 Gene3D Cytochrome P450 3 311 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS E-class P450 group IV signature 263 281 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS E-class P450 group IV signature 104 130 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS E-class P450 group IV signature 170 186 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS E-class P450 group IV signature 204 218 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 PRINTS E-class P450 group IV signature 221 239 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc211642g00003 316 SUPERFAMILY Cytochrome P450 15 316 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211642g00003 Stsc-Chr211642 39836 41145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211642g00003 5 316 Cytochrome P450 AT2G45510 52.978 2.41e-117 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211642g00003 - - vvi:100265146 441.425