Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211641g00010 ATGAGAGAATGGATCTGCAAATTTATCTGTTTTCAGGCAGGGTTTGCCGGAGATGATGCCCCACGTGCCGTGTTTCCCAGTATTGTTGGTCGTCCCCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAGGATGCTTATGTTGGTGATGAAGCTCAATCCAAGAGAGGTATTTTGACTCTCAAGTATCCAATTGAGCACGGTATTGTTAGCAATTGGGATGATATGGAGAAGATTTGGCATCATACCTTCTACAATGAACTTCGTGTGGCCCCCGAAGAGCATCCAGTTCTGTTGACTGAGGCTCCTCTTAACCCCAAGGCGAATCGTGAAAAGATGACCCAGATCATGTTTGAGACTTTCAATGCCCCTGCTATGTATGTTGCCATTCAGGCCGTTCTTTCACTGTATGCTAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACAGTCCCCATCTATGAGGGTTATGCCCTCCCACATGCTATCCTTCGTCTAGATTTGGCAGGTCGTGACCTGACTGATTTCTTGATGAAGATTCTGACTGAGCGTGGTTACTCATTCACCACCTCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAGCTGGCTTACATCGCCCTTGACTATGAGCAAGAGCTGGAGACAGCCAAGACCAGCTCCGCAGTGGAGAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACCATTGGCGCTGAGAGATTCAGGTGTCCAGAGGTCTTGTTCCAACCATCCATGGTGGGTATGGAAGCAGCGGGTATTCATGAGACGACATACAACTCCATCATGAAGTGTGATGTTGACATAAGAAAGGATTTGTATGGTAACATTGTCCTTTCTGGAGGTACAACCATGTTCCCGGGCATTGCTGACAGGATGAGCAAGGAAATCTCCGCATTAGCCCCCAGCAGCATGAAGATCAAGGTGGTAGCACCACCCGAGAGAAAATACAGTGTCTGGATCGGTGGTTCCATCTTGGCATCCCTCAGCACCTTCCAGCAGATGTGGATTGCAAAGGCTGAGTATGATGAATCTGGACCATCAATTGTTCATAGAAAGTGCTTCTAA 1110 0.4793 MREWICKFICFQAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211641g00010 369 SUPERFAMILY Actin-like ATPase domain 141 369 IPR043129 -
Stsc211641g00010 369 FunFam Actin, alpha skeletal muscle 247 322 - -
Stsc211641g00010 369 SMART actin_3 6 369 IPR004000 -
Stsc211641g00010 369 Pfam Actin 11 369 IPR004000 -
Stsc211641g00010 369 FunFam Actin, alpha skeletal muscle 323 369 - -
Stsc211641g00010 369 FunFam Actin, muscle 174 265 - -
Stsc211641g00010 369 CDD NBD_sugar-kinase_HSP70_actin 68 175 - -
Stsc211641g00010 369 ProSitePatterns Actins signature 2. 350 358 IPR004001 -
Stsc211641g00010 369 Gene3D - 11 363 - -
Stsc211641g00010 369 PRINTS Actin signature 20 29 IPR004000 -
Stsc211641g00010 369 PRINTS Actin signature 230 246 IPR004000 -
Stsc211641g00010 369 PRINTS Actin signature 55 77 IPR004000 -
Stsc211641g00010 369 PRINTS Actin signature 134 153 IPR004000 -
Stsc211641g00010 369 PRINTS Actin signature 109 122 IPR004000 -
Stsc211641g00010 369 PRINTS Actin signature 43 54 IPR004000 -
Stsc211641g00010 369 PANTHER ACTIN 13 362 IPR004000 -
Stsc211641g00010 369 ProSitePatterns Actins and actin-related proteins signature. 98 110 IPR020902 -
Stsc211641g00010 369 FunFam Actin, alpha skeletal muscle 7 156 - -
Stsc211641g00010 369 Gene3D Actin; Chain A, domain 4 174 265 - -
Stsc211641g00010 369 SUPERFAMILY Actin-like ATPase domain 12 147 IPR043129 -
Stsc211641g00010 369 ProSitePatterns Actins signature 1. 47 57 IPR004001 -
Stsc211641g00010 369 Gene3D - 132 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211641g00010 Stsc-Chr211641 53185 55036 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211641g00010 12 369 Cytoskeleton Gene Families AT3G12110 97.207 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211641g00010 K10355 - gmx:100798523 712.22