Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211641g00007 ATGGCCTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTATAGGTATAAAATGCCCAAAATGATTACCAAAATCGAGGGTAGAGGGAATGGCATCAAGACAAATATTGTCAATATGGTTGATATTGCCAAGGCATTGGCAAGGCCAGCCTCTTACACAACCAAATACTTTGGGTGTGAGCTTGGAGCTCAGTCAAAGTTTGATGAGAAATCTGGTACTTCTCATGTTAATGGGGCGCACGACACTGCAAAACTTGCTGGCCTTCTTGAGAACTTCATCAAGAAATTTGTTCAATGTTATGGTTGTGGAAACCCGGAAACGGAGATATTGATTACCAAGAACCAGATGATCCAGCTGAAATGTGCTGCCTGTGGTTTTGTGTCGGATGTGGATATGAGGGACAAGCTGACTACATTTATTCTGAAAAACCCTCCCGAAACGAAGAAAGGATCCAAAGACAAGAAGGCCATGAGAAGAGCTGAGAAGGAGAGATTGAAGGAAGGTGAAATGGCTGATGAGGAGCAGAAGAAAATCAAGAAGGAGGTAAAGAAGAAAGTCTCTTCCACTTCCAAGGATGGCACTGCAAAGTCAACCACTAAGAAGAAGGCAAGTACCTCAGATGATGACCGGATATCACCTACTCACAGTCAAGTGGATGAGAAAGAAGATGCTTCTCAGGAAGAAGATGATGATGATGACATCCAATGGCAAACTGACACCTCACTGGAGGCTGCTCGCCAACGCATCCAAGAACAGCTAAGTGCTGTAACAGCTGATATGGTCATGCTCTCCACTAATGAGCCTGAGAAGAATGGAAAAACATCAAGCAAGGCGAGCAATGGTTCTGAAAATGGTGGCTCACATGACTACAAAACACTTTTCAGAGAAGTGAAGGAAATTTTGAATAAAGGTGTTGCTGCAAAGGATTTGCAGTCCCATCTGGCATCACTTCCTGCATCTGCTCAAGACAAGACAAATGCTCTATTTGAGGCCTTATTTGAGGGCACTGAGAAAGGATTTGCAAAGGAAGTGATCAAGAAGAAGAGTTACCTTGCTGCTGCAGTCTCTATGGAGGAAGGGTCACAGTTACTGTTGCTTGGTGCAATTGAGGCTTTCTGTATGAAGTCCACTTCCAGTGCTCTGAAGGAAGTTGCCCTTATTTTGAAGGCTCTGTATGATGCTGATGTGCTGGAGGAAGAGAACATATTGCAGTGGTATCAAGCAGGGGCCAAGGGTGATAACAAGGACTCTAAGATTTGGAAGAATGCCAAACCCTTCATTGATTGGCTTCAGAGTGCGGAATCAGAGTCAGAGGAAGAATGA 1329 0.4424 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKSGTSHVNGAHDTAKLAGLLENFIKKFVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFILKNPPETKKGSKDKKAMRRAEKERLKEGEMADEEQKKIKKEVKKKVSSTSKDGTAKSTTKKKASTSDDDRISPTHSQVDEKEDASQEEDDDDDIQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNEPEKNGKTSSKASNGSENGGSHDYKTLFREVKEILNKGVAAKDLQSHLASLPASAQDKTNALFEALFEGTEKGFAKEVIKKKSYLAAAVSMEEGSQLLLLGAIEAFCMKSTSSALKEVALILKALYDADVLEEENILQWYQAGAKGDNKDSKIWKNAKPFIDWLQSAESESEEE 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211641g00007 442 ProSiteProfiles W2 domain profile. 285 442 IPR003307 GO:0005515
Stsc211641g00007 442 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Stsc211641g00007 442 Gene3D - 105 145 - -
Stsc211641g00007 442 SUPERFAMILY ARM repeat 291 436 IPR016024 -
Stsc211641g00007 442 MobiDBLite consensus disorder prediction 268 291 - -
Stsc211641g00007 442 MobiDBLite consensus disorder prediction 144 236 - -
Stsc211641g00007 442 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Stsc211641g00007 442 Pfam eIF4-gamma/eIF5/eIF2-epsilon 364 442 IPR003307 GO:0005515
Stsc211641g00007 442 Gene3D - 288 442 - -
Stsc211641g00007 442 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 441 IPR045196 GO:0003743|GO:0006413
Stsc211641g00007 442 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Stsc211641g00007 442 Gene3D - 2 104 - -
Stsc211641g00007 442 CDD W2_eIF5 308 435 - -
Stsc211641g00007 442 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Stsc211641g00007 442 SMART 542_3 350 438 IPR003307 GO:0005515
Stsc211641g00007 442 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Stsc211641g00007 442 MobiDBLite consensus disorder prediction 148 224 - -
Stsc211641g00007 442 FunFam Eukaryotic translation initiation factor 5 100 145 - -
Stsc211641g00007 442 MobiDBLite consensus disorder prediction 269 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211641g00007 Stsc-Chr211641 40152 42616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211641g00007 1 435 Eukaryotic Initiation Factors Gene Family AT1G77840 64.480 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211641g00007 K03262 - gmx:100796565 655.21