Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211641g00006 ATGGCCTTACAAAACATTGGTGCTGCAAACAGTGATGATGCCTTCTATAGGTATAAGATGCCCAAAATGATTACCAAAATCGAGGGTAGAGGAAATGGCATCAAGACAAATATTGTCAATATGGTTGATATCGCCAAGGCATTGGCAAGGCCAGCCTCTTACACAACCAAGTACTTTGGGTGTGAGCTTGGAGCCCAATCAAAGTTTGACGAGAAATCTGGTACTTCTCATGTTAATGGGGCGCACGACACTGCAAAACTTGCTGGTCTTCTTGAGAACTTCATCAAGAAATTTGTTCAATGTTATGGCTGTGGAAACCCTGAAACGGAGATATTGATTACCAAGAACCAGATGATCCAGCTGAAATGTGCTGCCTGTGGTTTTGTCTCGGATGTGGATATGAGGGACAAGTTGACTACATTTATTCTGAAAAACCCTCCCGAAACAAAGAAAGGATCCAAAGATAAGAAGGCCATGAGAAGAGCTGAGAAGGAGAGATTGAAGGAAGGTGAAATGGCTGATGAGGAGCAGAAGAAAATCAAGAAGGAGGTAAAGAAGAAAGTCTCTTCCACTTCCAAGGATGGAACTACAAAGTCAACCACTAAGAAGAAGGCAAGTACCTCAGATGATGACCGTATATCACCTACTCACAGTCAAGTGGACGAGAAAGAGGATGCTTCTCAGGAAGATGATGATGATGACATCCAATGGCAAACAGATACATCACTGGAGGCGGCTCGCCAACGCATCCAAGAACAGTTAAGTGCTGTAACAGCTGATATGGTCATGCTCTCCACAAATGAGCCTGAGAAGAATGGAAAAACAACAAGCAAGGAGAGCAATGGTTCTGAAAATGGTGGCTCACATGACTACAGCACACTTGTTGGAGAAGTGAAGGCAATTTTGAATAAAGGTGTTGCTGCAAAGGATTTGCAGTCCCATCTGGCATCACTTCCTGCATCTGCTCAAGACAAGACAAATGCTCTATTTGAGGCCTTATTTGAGGGCACTGAGAAAGGATTTGCAAAGGAAGTGATCAAGAAGAAGAGTTACCTTGCTGCTGCAGTCTCTATGGAGGAAGGGTCACAGTTACTGTTGCTTGGTGCAATTGAGGCTTTCTGTATGAAGTCCACTTCCAGTGCTCTGAAGGAAGTTGCCCTTATTTTGAAGGCTCTGTATGATGCTGATGTGCTGGAGGAAGAGAACATATTGCAGTGGTATCAAGCAGGGGCCAAGGGTGATAACAAGGACTCTAAGATTTGGAAGAATGCCAAACCCTTCATTGATTGGCTTCAGAGTGCGGAATCAGAGTCAGAGGAAGAATGA 1326 0.4404 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKSGTSHVNGAHDTAKLAGLLENFIKKFVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFILKNPPETKKGSKDKKAMRRAEKERLKEGEMADEEQKKIKKEVKKKVSSTSKDGTTKSTTKKKASTSDDDRISPTHSQVDEKEDASQEDDDDDIQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNEPEKNGKTTSKESNGSENGGSHDYSTLVGEVKAILNKGVAAKDLQSHLASLPASAQDKTNALFEALFEGTEKGFAKEVIKKKSYLAAAVSMEEGSQLLLLGAIEAFCMKSTSSALKEVALILKALYDADVLEEENILQWYQAGAKGDNKDSKIWKNAKPFIDWLQSAESESEEE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211641g00006 441 Pfam eIF4-gamma/eIF5/eIF2-epsilon 363 441 IPR003307 GO:0005515
Stsc211641g00006 441 Gene3D - 105 145 - -
Stsc211641g00006 441 Gene3D - 291 441 - -
Stsc211641g00006 441 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Stsc211641g00006 441 MobiDBLite consensus disorder prediction 266 290 - -
Stsc211641g00006 441 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Stsc211641g00006 441 CDD W2_eIF5 307 434 - -
Stsc211641g00006 441 SMART 542_3 349 437 IPR003307 GO:0005515
Stsc211641g00006 441 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Stsc211641g00006 441 SUPERFAMILY ARM repeat 291 435 IPR016024 -
Stsc211641g00006 441 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Stsc211641g00006 441 Gene3D - 2 104 - -
Stsc211641g00006 441 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 440 IPR045196 GO:0003743|GO:0006413
Stsc211641g00006 441 MobiDBLite consensus disorder prediction 144 235 - -
Stsc211641g00006 441 MobiDBLite consensus disorder prediction 148 224 - -
Stsc211641g00006 441 FunFam Eukaryotic translation initiation factor 5 100 145 - -
Stsc211641g00006 441 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Stsc211641g00006 441 ProSiteProfiles W2 domain profile. 284 441 IPR003307 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211641g00006 Stsc-Chr211641 33072 42616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211641g00006 1 434 Eukaryotic Initiation Factors Gene Family AT1G36730 61.851 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211641g00006 K03262 - gmx:100777906 657.521