Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211639g00005 ATGGCGTTTTGGATCTGTTCGTGGTTTTTTTTGGCAATTTGCTCTGGCTTGGTTCGTGGTGCGAAGGATAAGCGCCTCAGGGTGAAGGGACCTGTGAGGATGCTAACTAAGGTTCTTCACATCACTACCAGGAAATCCCCTTGTGGTGAAGAGAGGTATCCATTGTTTTCCTTCCCTTTGTTTGCAAGTACCAACACCTGGGACAGATTTGAGCTACGTGTTCACAAGAGGGTCATCGATCTCTACAGTTCCCCAGATGTTGTTAAGCAGATTACCTCAATCACAATCGAGCCCGGTGTTGAGGTGGAGGTCACAATTGCAGATGCTTGA 330 0.4758 MAFWICSWFFLAICSGLVRGAKDKRLRVKGPVRMLTKVLHITTRKSPCGEERYPLFSFPLFASTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211639g00005 109 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 13 108 IPR001848 GO:0003735|GO:0005840|GO:0006412
Stsc211639g00005 109 Pfam Ribosomal protein S10p/S20e 52 105 IPR027486 -
Stsc211639g00005 109 Pfam Ribosomal protein S10p/S20e 14 52 IPR027486 -
Stsc211639g00005 109 SUPERFAMILY Ribosomal protein S10 13 106 IPR036838 -
Stsc211639g00005 109 SMART Ribosomal_S10_2 2 105 IPR027486 -
Stsc211639g00005 109 Gene3D Ribosomal protein S10 domain 10 108 IPR036838 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211639g00005 Stsc-Chr211639 36535 37689 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211639g00005 13 109 Cytoplasmic Ribosomal Protein Gene Family AT5G62300 78.351 1.10e-48 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211639g00005 K02969 - gmx:100817306 154.451