Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211637g00001 ATGTCTCTCGAAGAGTCTCTAAGATCTCTCTCGCTTGACTACCTCAACCTGCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTGGAAGGCCGACTCGTCCACGCCCACCGCTGCATCCTCGCAGCACGGAGCCTCTTCTTCAGGAAATTCTTTTGCGGCCCGGACCCTCCCTGCGGCCTCGACCCCCTCGGAGCCTCCAGGGGAAGCCCGGGCCCCACGAGCACGGGCTCATCCAGGACACCCGCGGGTGTGATCCCGGTGAACTCCGTGGGCTACGAAGTGTTCTTGCTGCTTCTTCAGTTCCTGTACAGCGGCCAGGTGTCCATCGTGCCTCAGAAGCACGAGGCCCGGCCCAATTGCGGTGAGAGGGGTTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTCGCCCTTGACACCCTCGCTGCCGCTAGATATTTTGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAGCAAGCATGGTAGAGAAAGCATCAATTGAAGATGTGATGAAGGTACTATTGGCTTCAAGAAAGCAAGAAATGCAGCAGTTATGGACAACATGCTCCCACTTAGTGGCCAAGTCAGGCCTCCCACCTGAGGTTCTTGCCAAGCACCTCCCAATCGACCTCGTTGCCAAGATCGAAGAGCTCCGCCTCAAGTCCTCCCTCTCCCGCCGCTCCCTCATGCCGTCTCCGCTCCACCACCACCATCACCACCACGACCTCGCCCTCGCTGCCGTGGGAGACATCGAGGATCAGAAGATCCGCAGGATGCGACGGGCCCTCGATTCCTCCGACGTCGAGCTTGTCAAGCTCATGGTGATGGGCGAGGGCCTCAACCTGGACGAGGCGCTCGCCCTTCACTATGCAGTGGAGAATTGTTCCAGGGAGGTCGTCAAGGCCCTCCTGGAGCTCGGTGCTGCGGACGTCAACTTCCCGGCTGGACCAGCCGGGAAGACGCCGCTTCATGTCGCCGCGGAAATGGTGTCCCCCGACATGGTGGCCGTTTTACTCGACCACCACGCCGATCCTAACGTGCGCACCGTGGATGGTGTCACACCTTTGGATATCCTAAGAACCCTAACCTCCGATTTCCTCTTCAAAGGAGCGGTTCCTGGTCTCACTCACATTGAACCCAACAAGCTAAGGCTGTGTTTGGAGCTTGTTCAATCTGCGGCACTTGTTCTTTCACGAGAAGAAGGGAATGCAAACCCTCCTTGTTCAGCAACAGCAATATACCCTCCTCCAATGAGCACCGATCATCAGGACCATAGTGGGAACTTGGATTCAAGATTGGTGTACCTTAATCTTGGTGCTTCGGGTTCCGGTGGACAAATGGGTAGTGGCGGCGGTGGTGGTGGTGGTGGTGGAGACGATGATAGTAGCAGCCACAGTAGCCATAGCCAGAGAGAAGGGATGAACCGTCATGGTGGTGGTGGATGTGACCCTTCAATGTACCACCACCACCATCATCATCACTCTCATCATGACTACTAA 1515 0.5683 MSLEESLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPCGLDPLGASRGSPGPTSTGSSRTPAGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEARPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLASMVEKASIEDVMKVLLASRKQEMQQLWTTCSHLVAKSGLPPEVLAKHLPIDLVAKIEELRLKSSLSRRSLMPSPLHHHHHHHDLALAAVGDIEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNFPAGPAGKTPLHVAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANPPCSATAIYPPPMSTDHQDHSGNLDSRLVYLNLGASGSGGQMGSGGGGGGGGGDDDSSSHSSHSQREGMNRHGGGGCDPSMYHHHHHHHSHHDY 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211637g00001 504 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 496 IPR044284 GO:0099402
Stsc211637g00001 504 Pfam BTB/POZ domain 16 116 IPR000210 GO:0005515
Stsc211637g00001 504 ProSiteProfiles Ankyrin repeat region circular profile. 323 353 - -
Stsc211637g00001 504 ProSiteProfiles Ankyrin repeat profile. 323 355 IPR002110 GO:0005515
Stsc211637g00001 504 SUPERFAMILY POZ domain 9 165 IPR011333 -
Stsc211637g00001 504 FunFam regulatory protein NPR5 isoform X1 4 200 - -
Stsc211637g00001 504 SMART ANK_2a 323 352 IPR002110 GO:0005515
Stsc211637g00001 504 SMART ANK_2a 288 318 IPR002110 GO:0005515
Stsc211637g00001 504 Pfam Domain of unknown function (DUF3420) 202 265 IPR024228 -
Stsc211637g00001 504 MobiDBLite consensus disorder prediction 445 504 - -
Stsc211637g00001 504 Gene3D - 255 371 IPR036770 -
Stsc211637g00001 504 Gene3D Potassium Channel Kv1.1; Chain A 3 200 IPR011333 -
Stsc211637g00001 504 SMART BTB_4 25 167 IPR000210 GO:0005515
Stsc211637g00001 504 FunFam regulatory protein NPR5 isoform X2 254 371 - -
Stsc211637g00001 504 ProSiteProfiles BTB domain profile. 25 114 IPR000210 GO:0005515
Stsc211637g00001 504 SUPERFAMILY Ankyrin repeat 282 366 IPR036770 -
Stsc211637g00001 504 Pfam Ankyrin repeats (3 copies) 271 353 IPR002110 GO:0005515
Stsc211637g00001 504 CDD BTB_POZ_NPR_plant 8 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211637g00001 Stsc-Chr211637 11214 16372 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211637g00001 248 377 C2H2 Transcription Factor Family AT5G12850 30.872 4.79e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Stsc211637g00001 BTB 1.3e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211637g00001 K14508 - zju:107433767 706.442