Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211636g00007 ATGGCGGAACCGGAGCTCAAACATGCGGAGGACCAATCAAGCAACAAGAAGAAGCTCCGCAAAAGGAAAAGGTCTCGCAAAGCTCAACAAGAAGCTCACCATTCCGCTGATGAAGAAGAGCAGCACAACAACGCTAACAACACTGATGCTGAAGAAGAAGAAGAAAGGGAAGAGAAAAATGTGACGCCTGGCGTTGAATCTGGAATCATGAGTGCCGTTTCATTCGATTCTCTTGAACTCTCTGATCCTACTTCCAAGGCTATTAAGGACATGGGCTTCAACCGAATGACTCAGATTCAAGCGAGAGCTATTCCGGAGCTTTTGCAAGGGAAAGATGTTCTCGGTGCTGCGAGGACTGGTTCTGGAAAAACCCTTGCATTTTTAATCCCAGCCGTGGAGTTGTTGTACAATGCCGAGTTTAAACCTCGCAATGGAACAGCAGTTATTGTCATATGTCCAACTAGAGAGCTTGCAATTCAGACACATGCGGTGGCAAGGGAATTGCTCAAGTATCATTCACAAAGTCTTGGATTAGTTATTGGGGGTTCAGGTAGAAAACGAGAGGCTGAACGGATTATTTCTGGGGTAAATCTATTGGTGGCAACACCTGGTCGCCTCCTTGATCACCTTCAAAATACGAAGGGATTCATATATAAAAACTTGAAGTGTCTCATTATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATCATTAACATACTTCCAAAGACTAGGCAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTAAGGATCTTGCCTGTTTGTCATTTCAGACAAGTCCTTCCAATATTGATGTAGATGATGGGAGAAGAAAGGTCACAAATGAAGGATTGCAGCAAGGCTATGTCGTTGTTCCATGTGCCAAGCGTTTTGTTGTTCTATATTCATTCTTGAGGAGGCATCAATCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACCTTCTCAAGTGTGCTGGATTGGATTGCTTAAATATTCATGGAAAACAAAAGCAGCATGCCCGAACAACTACATTCTTTGATTTCTGCAAAGCAGAAAAGGGGATATTGCTTTGTACTGATGTTGCTGCTCGCGGGCTTGACATACCTGATGTGGACTGGATTGTGCAGTATGATCCACCTGATGAGCCAAAGGAATATATCCATCGGGTTGGTAGAACAGCTCGTGGGGAAGGTGCCAAAGGAAATGCTTTGCTTTTTCTGATTGAGGAAGAATTGCAATTTCTTCGCTATCTTAAGGCAGCGAAGATCCCTATGAAAGAGTATGTATTTGAACACAAGAAGCTTGCGAATATACAGTCTCAACTGGAAAAGATGGTTGGTGGCATCTATCATTTGAATGTTATGGCGAAAGATGCTTACAGGTCATTTATATTAGCATATAATGCCCACACTATGAAGGATATATTCAATGTTCATTGCCTTGATCTACAGGCCGTTGCTGCTTCGTTCTGTTTTTCAAACCCGCCAAAGGTAAATCTGAACTTAGACAGCAGTGCTTCAAAGCATAGGAGGAAAATACGCAAAGTGGAAGGAAGAATCGGCGATGGATCGGCAAAATAA 1632 0.4265 MAEPELKHAEDQSSNKKKLRKRKRSRKAQQEAHHSADEEEQHNNANNTDAEEEEEREEKNVTPGVESGIMSAVSFDSLELSDPTSKAIKDMGFNRMTQIQARAIPELLQGKDVLGAARTGSGKTLAFLIPAVELLYNAEFKPRNGTAVIVICPTRELAIQTHAVARELLKYHSQSLGLVIGGSGRKREAERIISGVNLLVATPGRLLDHLQNTKGFIYKNLKCLIIDEADRILEANFEEEMKQIINILPKTRQTALFSATQTKKVKDLACLSFQTSPSNIDVDDGRRKVTNEGLQQGYVVVPCAKRFVVLYSFLRRHQSKKVMVFFSSCNSVKFHADLLKCAGLDCLNIHGKQKQHARTTTFFDFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGAKGNALLFLIEEELQFLRYLKAAKIPMKEYVFEHKKLANIQSQLEKMVGGIYHLNVMAKDAYRSFILAYNAHTMKDIFNVHCLDLQAVAASFCFSNPPKVNLNLDSSASKHRRKIRKVEGRIGDGSAK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211636g00007 543 Coils Coil 35 56 - -
Stsc211636g00007 543 Pfam Domain of unknown function (DUF4217) 455 515 IPR025313 -
Stsc211636g00007 543 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 225 233 IPR000629 -
Stsc211636g00007 543 PANTHER RNA HELICASE 30 451 - -
Stsc211636g00007 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Stsc211636g00007 543 FunFam RNA helicase 290 520 - -
Stsc211636g00007 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 279 IPR014001 -
Stsc211636g00007 543 MobiDBLite consensus disorder prediction 30 49 - -
Stsc211636g00007 543 SMART helicmild6 333 414 IPR001650 -
Stsc211636g00007 543 SMART DUF4217_3 454 517 IPR025313 -
Stsc211636g00007 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 435 IPR027417 -
Stsc211636g00007 543 CDD SF2_C_DEAD 294 424 - -
Stsc211636g00007 543 SMART ultradead3 92 297 IPR014001 -
Stsc211636g00007 543 Pfam Helicase conserved C-terminal domain 309 413 IPR001650 -
Stsc211636g00007 543 Gene3D - 11 282 IPR027417 -
Stsc211636g00007 543 CDD DEADc_DDX18 84 277 IPR044773 GO:0003724|GO:0005524
Stsc211636g00007 543 MobiDBLite consensus disorder prediction 1 16 - -
Stsc211636g00007 543 Gene3D - 290 532 IPR027417 -
Stsc211636g00007 543 Pfam DEAD/DEAH box helicase 97 268 IPR011545 GO:0003676|GO:0005524
Stsc211636g00007 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 306 453 IPR001650 -
Stsc211636g00007 543 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211636g00007 Stsc-Chr211636 31636 36389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211636g00007 68 433 Eukaryotic Initiation Factors Gene Family AT3G19760 27.248 1.30e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211636g00007 K13179 - gmx:100798290 854.744