Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211636g00006 ATGAAGCACCACTTCAGCAGGATCCATGCATTTTCTTGTGGGAAAGCTTCAATTATCAGAGACAATGAGGAACATTCACTCATTGGAGGCCCTGGATTCTCAAGAATAGTGTATTGCAATGATGCTGAGGGAAGTAGCAATTTAGAACTCAACTATGGTGATAATTATGTCAGCACAACAAAGTACACACTTGCAACTTTTCTGCCCAAATCATTGTTTGAACAGTTTAGAAGGGTGGCCAATTTCTACTTCCTTGTTTGTGCTATACTGTCTTTCTTCCCTGTTTCACCTTATTCAGCTGTTAGCAATGTTGTTCCTCTTGTGGTTGTGGTCGCTGCTACAATGGGCAAAGAGGCTGTTGAGGATTGGAGAAGATTCAAGCAGGATGTTGAGATGAACAACAGAAGGGTTAAAGTTCACCATGGAGATGGTGTTTTTGGCCATTCCAAATGGAGGGATTTGAGAGTTGGAAACATAGTCAAAGTGGAAAAAGATGAATTTTTCCCTGCTGATCTGATCTTACTTTCGTCGAGCTATGACGACGCGATTTGTTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTTAAACTGAAGCAAGCACTGGAGGAAACTTCAAAGTTGCAAGAAGACTCAAACTTCAGAAATTTCAGTGCTACCATCAAATGTCATGATACAAAAGTTATGCAGAATTCGACAGATCCTCCTTCGAAGAGAAGCAATGTTGAGAGAAGAATGGATAAGATAATCTACTTCTTGTTCCTCATCTTGTTTTTTATTTCTTTTATTGGCTCAATTTTCTTTGGGATTGCAACAAGGGAAGACTTAGAAAATGGAAGAATGAAGAGATGGTACCTTCGACCCGATGATACTACAATCTATTATGATCCAAAGAGAGCACCAATTGCAGCAACTTTGCATTTCTTGACTGCACTTATGCTGTACAGTTACTTGATTCCAATTTCTTTGTATGTTTCCATTGAAATTGTCAAAGTTCTTCAAAGCATTTTCATCAACCAGGACTTGAACATGTATTATGAGGAAACAGACCAGCCAGCACATGCTAGAACCTCGAATTTGAATGAAGAACTAGGCCAAGTTGACACAATACTTTCGGATAAAACAGGAACTTTGACTTGCAACTCTATGGAGTTTATCAAGTGTTCTATTGCCGGGGTCGCCTATGGACGGGGTGTTACTGAAGTTGAGAGAGCCATGGCTAGGAGAAAAGGTAAAGAGTTGACTGAAGATGACAATATTGCAAATTCTGAAGCAAAACCATCAATTAAAGGCTTCAACTTTATGGATGAAAGGATCATGAATGGAAATTGGTACAAAGAACCTCATGCCTTTGTAATACAGAAATTCCTGCGCTTACTGGCTCTATGCCATACTGCAATACCTGAAGTTGATGAAGAAACTGGTAAAGTTTCGTATGAAGCTGAGTCACCGGATGAGGCAGCTTTTGTTATAGCTGCTAGAGAACTTGGATTTGAGTTTTATGAAAGGACACAGTCAAGTATTTTGCTGCGTGAGCTCAATTCTGCATCAGGCAAGATTACTGAAAGGACCTATAAACTCTTGAATATATTAGAGTTTACTAGTGCAAGAAAGAGGATGTCGGTGATAGTGAGAGATGAAGAGGGTAAGCTACTACTACTTAGCAAAGGCGCTGACAGTGTCATGTTCGAACGGCTCGCAAAGGATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATTAATGAGTATGCTGATGCTGGTTTGAGGACCTTGATACTTGCATATCGTGAGCTCGATGAGGATGAATACAATCAATTTAATAAAGAACTCATGGAAGCCAAGAACTTGGTGAGTGCGGATCGAGAGGAGATAATAGATGAAGTATCCGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGCATTAAGCTATGGGTTTTAACTGGTGACAAAATGGAGACAGCAATCAACATTGGATTTGCTTGTAGTTTACTCAGACAAGGAATGAAGCAAATTATAATTAGCTCGGACACTCCGGAGGCCAAATCTTTGGAGAAAGCCGAGGACAAATCTGCTGCGGATGCGGCAATCAAGGAAATCGTTCTTCGTCAATTAAGGGAAGGAGAGACATTACTTGCTTCATCTAATGAAAACTCTGAGGCCATTGCTCTGATCATCGACGGGAAGTCTCTCACACACGCTCTAGATGATGATGTTATGGACTTGTTTCTGGAACTCGCCATCGGCTGTGCATCGGTTATATGTTGCCGGTCATCTCCTAAACAGAAAGCACTTGTAACTAGATTAGTTAAGACGAAAACTCGTAGTACAACTCTAGCAATTGGTGATGGGGCTAATGATGTTGGAATGCTCCAAGAAGCAGACATTGGGATTGGTATAAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATCGCACAGTTCCGGTTTCTAGAGCGCTTACTTCTAGTGCATGGACATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAACATTGCCTTTGGATTCACTCTTTTCTTCTACGAGATTTATGCCTCGTTCTCCGGCGAAGCTGCATACAATGATTGGTTCCTGTCATTATATAATGTCTTCTTCACTTCTCTTCCTGTTATTGCCTTGGGAGTATTTGACCAAGATGTCTCTGCTAAATTATGCCTCAAGTTCCCATTGTTATATCAAGAAGGTGTACAAAATGTCCTATTTAGCTGGAAACGAATCCTCGGATGGGCATTCAACGGAGTCTTGAACGCTACATTGATATTCTTCTTCTGCATCAAGGCAATAGAGTATCAGGCATTCCGAAAAGGGGGTGAAGTCGCGGGGCTCGAAGTTCTTGGAGCCACCATGTACACTTGTGTAGTTTGGGTTGTTAATTGCCAAATGGCATTATCCATAAGTTACTTCACTTACATTCAACACATTTTCATTTGGGGTGGCATTCTTCTATGGTATTTATTCCTCTTAGCATATGGTGCCATGGATCCTACTCTTTCAACCACTGCATATAAGGTCTTTGTTGAAGCTTGTGCTCCAGCACCATCTTACTGGCTCATAACTCTTCTTGTTCTTGCTACTTCACTCCTTCCCTATTTCATCTACGCGTCGATCCAGATGCGATTCTTCCCCATGTTCCATCAGATGATACAGTGGATAAGAAGTGATGGCCAAGCAACTGACCCCGAATATGTCTATGTCGTTCGCCAGAGATCGTTAAGACACAACACGGTCGGCTTCACTGCCCGTTTTGAAGCATCGAAACGGCTTCAGGTCTGA 3396 0.4134 MKHHFSRIHAFSCGKASIIRDNEEHSLIGGPGFSRIVYCNDAEGSSNLELNYGDNYVSTTKYTLATFLPKSLFEQFRRVANFYFLVCAILSFFPVSPYSAVSNVVPLVVVVAATMGKEAVEDWRRFKQDVEMNNRRVKVHHGDGVFGHSKWRDLRVGNIVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKLKQALEETSKLQEDSNFRNFSATIKCHDTKVMQNSTDPPSKRSNVERRMDKIIYFLFLILFFISFIGSIFFGIATREDLENGRMKRWYLRPDDTTIYYDPKRAPIAATLHFLTALMLYSYLIPISLYVSIEIVKVLQSIFINQDLNMYYEETDQPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGVAYGRGVTEVERAMARRKGKELTEDDNIANSEAKPSIKGFNFMDERIMNGNWYKEPHAFVIQKFLRLLALCHTAIPEVDEETGKVSYEAESPDEAAFVIAARELGFEFYERTQSSILLRELNSASGKITERTYKLLNILEFTSARKRMSVIVRDEEGKLLLLSKGADSVMFERLAKDGREFEEKTKQHINEYADAGLRTLILAYRELDEDEYNQFNKELMEAKNLVSADREEIIDEVSEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPEAKSLEKAEDKSAADAAIKEIVLRQLREGETLLASSNENSEAIALIIDGKSLTHALDDDVMDLFLELAIGCASVICCRSSPKQKALVTRLVKTKTRSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGEAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSAKLCLKFPLLYQEGVQNVLFSWKRILGWAFNGVLNATLIFFFCIKAIEYQAFRKGGEVAGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGGILLWYLFLLAYGAMDPTLSTTAYKVFVEACAPAPSYWLITLLVLATSLLPYFIYASIQMRFFPMFHQMIQWIRSDGQATDPEYVYVVRQRSLRHNTVGFTARFEASKRLQV 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211636g00006 1131 Pfam Phospholipid-translocating ATPase N-terminal 37 102 IPR032631 -
Stsc211636g00006 1131 FunFam Phospholipid-transporting ATPase 483 641 - -
Stsc211636g00006 1131 Gene3D - 479 641 IPR023299 GO:0000166
Stsc211636g00006 1131 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1083 IPR023298 -
Stsc211636g00006 1131 SFLD p-type atpase 354 856 IPR044492 -
Stsc211636g00006 1131 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 440 643 IPR023299 GO:0000166
Stsc211636g00006 1131 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 36 225 - -
Stsc211636g00006 1131 NCBIfam phospholipid-translocating P-type ATPase 225 1090 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc211636g00006 1131 Pfam Cation transport ATPase (P-type) 463 567 - -
Stsc211636g00006 1131 Gene3D - 110 235 - -
Stsc211636g00006 1131 SFLD Haloacid Dehalogenase 354 856 - -
Stsc211636g00006 1131 ProSitePatterns E1-E2 ATPases phosphorylation site. 374 380 IPR018303 -
Stsc211636g00006 1131 CDD P-type_ATPase_APLT_Dnf-like 54 965 - -
Stsc211636g00006 1131 FunFam Phospholipid-transporting ATPase 641 845 - -
Stsc211636g00006 1131 NCBIfam HAD-IC family P-type ATPase 771 888 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211636g00006 1131 NCBIfam HAD-IC family P-type ATPase 104 265 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc211636g00006 1131 SUPERFAMILY Calcium ATPase, transduction domain A 139 209 IPR008250 -
Stsc211636g00006 1131 Gene3D - 642 845 IPR023214 -
Stsc211636g00006 1131 Coils Coil 598 625 - -
Stsc211636g00006 1131 PRINTS P-type cation-transporting ATPase superfamily signature 805 824 - -
Stsc211636g00006 1131 PRINTS P-type cation-transporting ATPase superfamily signature 372 386 - -
Stsc211636g00006 1131 PRINTS P-type cation-transporting ATPase superfamily signature 691 701 - -
Stsc211636g00006 1131 Pfam Phospholipid-translocating P-type ATPase C-terminal 833 1083 IPR032630 -
Stsc211636g00006 1131 SUPERFAMILY HAD-like 367 860 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211636g00006 Stsc-Chr211636 22478 28040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211636g00006 4 1128 Primary Pumps ATPases AT3G25610 67.827 0.0 1694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211636g00006 K01530 - gmx:100797039 1887.46