Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211633g00006 ATGGCAGCTGCAACATCTGGTGCTGTGTTAAACGGTTTGGGATCATCTTTCCTTTGTGGAGGAAAGAGGAGCCAAACACTTCTTGCTAATGCTATTGCAGGCAAAGCTGGTGCTTCTGTTAGTCCTAAAAGATATGTTGTTGCTGCTGCTGCTGCACCAAAGAAATCATGGATCCCTGCTGTTAGAGGTGGTGGAAACTTCATTGACCCTGAATGGCTTGATGGCTCGCTACCTGGTGACTATGGTTTTGACCCACTAGGGCTAGGGAGGGACCCAGCATTTCTGAAATGGTACAGAGAAGCTGAACTCATTCATGGAAGGTGGGCAATGGCTGCAGTTGTGGGAATCTTTGTTGGCCAGGCATGGAGTGGAGTTCCATGGTTTGAGGCTGGAGCTGACCCCAATGCAATTGCTCCTTTCTCCTTTGGTTCACTGCTTGGTACTCAGTTGCTTCTCATGGGTTGGGTTGAGAGCAAGAGATGGGTGGACTTCTTCAACCCTGACTCACAGTCAGTGGAATGGGCCACTCCATGGTCAAGAACAGCCGAGAACTTCGCCAATGCCACCGGAGATCAAGGCTACCCTGGTGGCAAATTCTTTGACCCTTTGGGACTTGCTGGCACAATCAAGGATGGTGTGTACATTCCGGACAGAGAGAAGCTTGAGAGACTCAAATTGGCTGAGATTAAGCATGCAAGGCTTGCCATGTTGGCTATGTTGATTTTCTACTTTGAGGCTGGTCAAGGGAAGACTCCCCTTGGTGCTCTTGGCTTGTAA 777 0.4942 MAAATSGAVLNGLGSSFLCGGKRSQTLLANAIAGKAGASVSPKRYVVAAAAAPKKSWIPAVRGGGNFIDPEWLDGSLPGDYGFDPLGLGRDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGVPWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFANATGDQGYPGGKFFDPLGLAGTIKDGVYIPDREKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211633g00006 258 Gene3D Chlorophyll a/b binding protein domain 70 257 - -
Stsc211633g00006 258 FunFam Chlorophyll a-b binding protein, chloroplastic 70 257 - -
Stsc211633g00006 258 SUPERFAMILY Chlorophyll a-b binding protein 68 258 - -
Stsc211633g00006 258 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 54 256 IPR001344 GO:0009765|GO:0016020
Stsc211633g00006 258 Pfam Chlorophyll A-B binding protein 70 246 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211633g00006 Stsc-Chr211633 23259 24257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211633g00006 1 258 Chloroplast and Mitochondria Gene Families AT1G15820 84.556 1.25e-156 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211633g00006 K08917 - gmx:100783223 493.041