Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211631g00005 ATGGCGACAAGAAAGGAAGAAGAGAGGAACGAGAAGATCATCAGAGGTCTCATGAAGCTTCCGCCCAATCGAAAATGCATCAACTGTAACAGTCTGGGCCCGCAATATGTATGTACCAACTTTTGGACCTTCGTTTGCATGACTTGCAGTGGAATCCATCGGGAGTTTACCCATCGTGTGAAGTCTGTATCTATGGCAAAGTTCACATCACAGGAAGTTGATTCTCTTCAAAATGGGGGTAACCAGCGCGCACGGGAAATATATTTGAAAAATTGGGACTTCCAGAGGCAACGGCTGCCAGATAGCAGCAATGTCGATAAAGTAAGGGAGTTTATAAGGCACGTCTATGTCGATCGAAGATATGCTGCAACAAAGTCTTCTGACAAGCCTCCAAGAGATATGCAGAACCCTAGAACGAATGAAGATGATACACGGCGTGCCAGTTCTTATCACTCCTATTCTCAAAGTCCTCCATATGATTACCAATATGAAGATCGTCGGTATGGGAAACAAGCAGCTGCACTGACCAGGAAGCCTGGTTCAGATAAAGTTCGCTATGAAGGAAAGANNNNNNNNNNCGGTCGCTTCAGTGATCATGCCTATGAGGATAGATTTGCTAATGAGGGATCTGGTCCGAGAATTTCTGACTTTTCTGTGTCTAGTGGTGGTGAGCAATTCAAATCTGAGGTTCAGTCTCCCAATTTTCATAAGGATATTGGATTTCATAGTCCACCCTATCGACATTCGGGTCACCATTCAAGTGAAGATGTCTGGTCTTTTGCAAGGAGTACATCTTTGGAAACTAATGCTAAGAGAGACGTGGAAGGAATTCGGCATCCGCAGAGGACTGCTTCACTGGGATCAATGGACAGCAACCTGTCATCTTTCAGATCTCACAATTCTGGTGGTTCAGTTGATTTTTTCTCTGAACCTGTCCAAGGTTTTGAACTGCTTCAGACTAAAGTTTCTTGTGTTCCCAGACCACCTGTTCCCGCAGGTTCTACTGGTTCTGATATTTCCAACGCACCTGTCGCAACAGAACCATTCCCTTCGTCTTCTTCATCCATTGATCTTTTTCAGTTGCCAGGGGCACCCTCTCAGTCTACGTCAGTGGATCTGTTTCAATCACCTGTTTTGTCTGCAGTTCCATATTCTAATGAGAGTCAGCCCACAAAAACCTCCCAGCCCTCATCAGTTGACTTTTTTTCGGACCTTTCTCAGCAGCCATCAACTGCAACCTCAGATGAGAAGTCATTGGAGTTATCTGTCCCTAAAAATGAAGGTTGGGCAACATTTGATATGCCTCAGTTCACATCTACTGCAAAAGTTGAAACTCCGGCAGTACTACCATCAACAACTGACGCATCGCAGGACAAATTTGTTCCATTCTTGAACTTGAATGGAAATATGCAATGGCCTTCATTTGAAACTTCTGGTGTTAGTGTTCCCTCCTCAGTTTCATCTAATGTATGGCATGATGGTGCATGTAATGGAGAAGAACAAGTTTCTGTTATAGCAACAGGCACTCAACCATGGAATGCATTTGAAGATTCCATTACCCCTGCTCCTGTGGATGGCCTTAATCGAGGATTACAACTGCAAAATCTTCCATCAACTGATGATCAATTTTTGGATTTAAGAGCTTCTGAGGGATCCAATGAAGGTGGGATGCAAGGCATTGCCCCTTTTGGCAGGTTTGATGATCATGTAATCTCTTCAAATTTTAGTGGTGGCTCAGCATATCCTCCATCTGCAATTCCTCCTATGGGAGAGAGTCAACCTAATGGAAACAGTCATAAATCAACTAATCCATTTGATTTTCTTGATAATTCTGATGTATCAGATGTAGAGCACAGGAATATGTTTCTTGATCTTGGCTCGTTGCAAGCTGCTCTGCCAGATGCACAGTTACCACCCACTTTCCATAGTGGTATTGATGAACCATGGCTTCCTCAAAATTCTGTGAACCCTTACATCTCCTCTGCAGGACAAGGTGGTGGTTTGACTTTCTTGGCTGCTCAACCACCAAGTTCTCAAATACCGAATATCCAGACGCAGGAATCGGTTGCATCTTTTGGGGGAAATCCTTTTGCATGA 2097 0.4378 MATRKEEERNEKIIRGLMKLPPNRKCINCNSLGPQYVCTNFWTFVCMTCSGIHREFTHRVKSVSMAKFTSQEVDSLQNGGNQRAREIYLKNWDFQRQRLPDSSNVDKVREFIRHVYVDRRYAATKSSDKPPRDMQNPRTNEDDTRRASSYHSYSQSPPYDYQYEDRRYGKQAAALTRKPGSDKVRYEGKXXXXGRFSDHAYEDRFANEGSGPRISDFSVSSGGEQFKSEVQSPNFHKDIGFHSPPYRHSGHHSSEDVWSFARSTSLETNAKRDVEGIRHPQRTASLGSMDSNLSSFRSHNSGGSVDFFSEPVQGFELLQTKVSCVPRPPVPAGSTGSDISNAPVATEPFPSSSSSIDLFQLPGAPSQSTSVDLFQSPVLSAVPYSNESQPTKTSQPSSVDFFSDLSQQPSTATSDEKSLELSVPKNEGWATFDMPQFTSTAKVETPAVLPSTTDASQDKFVPFLNLNGNMQWPSFETSGVSVPSSVSSNVWHDGACNGEEQVSVIATGTQPWNAFEDSITPAPVDGLNRGLQLQNLPSTDDQFLDLRASEGSNEGGMQGIAPFGRFDDHVISSNFSGGSAYPPSAIPPMGESQPNGNSHKSTNPFDFLDNSDVSDVEHRNMFLDLGSLQAALPDAQLPPTFHSGIDEPWLPQNSVNPYISSAGQGGGLTFLAAQPPSSQIPNIQTQESVASFGGNPFA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 383 419 - -
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 577 611 - -
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 334 362 - -
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 122 148 - -
Stsc211631g00005 698 SMART arf_gap_3 11 129 IPR001164 GO:0005096
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 383 421 - -
Stsc211631g00005 698 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 122 188 - -
Stsc211631g00005 698 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Stsc211631g00005 698 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Stsc211631g00005 698 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 590 609 - -
Stsc211631g00005 698 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 134 - -
Stsc211631g00005 698 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 129 IPR001164 GO:0005096
Stsc211631g00005 698 CDD ArfGap_AGFG 11 123 - -
Stsc211631g00005 698 MobiDBLite consensus disorder prediction 326 362 - -
Stsc211631g00005 698 PANTHER ARFGAP/RECO-RELATED 1 698 IPR044820 GO:0005096
Stsc211631g00005 698 SUPERFAMILY ArfGap/RecO-like zinc finger 9 122 IPR037278 -
Stsc211631g00005 698 Gene3D Arf GTPase activating protein 1 133 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211631g00005 Stsc-Chr211631 30826 38068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211631g00005 14 116 C2H2 Transcription Factor Family AT4G05330 35.088 1.52e-12 67.8