Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211628g00007 ATGGTGGGAAACGACGATGGTGGTGACCGGAGAATGTTTTGGAGGTCTGCGTCGTGGTCCTCCTCTCGCACCGGCACCGCTTCCAGCAATAATCCATCCGGTGAGGCGGATCCAAATTCCTGCGGCGGAGACACTGTCACCGGCCAGAATCGCAAGTTCTGTCCGCCGCCACTTACGCCGCGATCGCAGCAGAGTTCCAAGGCCCGGTCGAGCCTGCCGCCCCTCCAGCCGCTTTCGATAGCCCGGCGGAGCCTCGATGAGTGGCCGCAGGCGAGCTCTGACGACATTGGGGAGTGGCTGCCCCAGCAGCCGCCGTTGACCCCCGGTGGCGGCATGAGAGGTAACAATGGTGAAAGGTTGAAACTTGATCTATCTTCAATTCAGATGAACAATGATAGGAATTGCAATAGTGGCAGTAATGGTAGTGGTAATAATAATAGTTGTAGCAATAATGGTGTTAGTGGACTCTTGAAGAGAGATAGAATTGCATTTTTTGATAAGGAGTGTTCAAAAGTTGCTGAACATGTGTACCTTGGTGGTGATGCTGTTGCTAAGAATAGGGATATATTGAAGCAGAATGGGATCACTCATATTTTGAATTGTGTTGGTTTTGTGTGCCCTGAGTATTTTAAGGCCGATTTCGTGTATAGAACGTTGTGGCTTCAGGATAGTCCTTCAGAGGATATTACTAGTATCTTGTATGATGTGTTTGATTACTTTGAAGATGTTAGGGAACAAGGTGGTAGGGTGTTTGTGCACTGTTGTCAAGGTGTGTCTCGGTCTACTTCGTTGGTGATCGCANNNNNNNNNNACCTCATGTGGAGGGAAGGACAGAGTTTTGATGATGCTTTTCAGTTGGTGAAGGCTGCAAGGGGTATTGCCGATCCGAATATGGGGTTTGCTTGCCAGTTGTTGCAGTGCCAGAAGAGGGTGCATGCAGTTCCTCTTAGCCCTACCTCTTTGCTTCGGATGTATAGGATGGCTCCGCACTCGCCTTATGATCCTTTGCATCTCGTCCCCAAAATGTTGACGGATCCTTCTCCTTCCGCATTGGACTCAAGGGGAGCCTTTTTTGTACATATTCCTACTGCAATATTTGTTTGGATTGGTATGAAGTGCGATGCCATCATGGAAAGGGACGCCAGAGGTGCTGTGGGTCAGATTATTCGCTATGAGAAAGCGGAAGGACCCGTTCAAGTGATTAAGGAAGCTCATGAACCTGCTGACTTTTGGGAAGTTTTTTCAAGATTCTTGCCTTTGATGGATAAATCTTACAGTAAAATAGAAAGTATCAAATCAAGTGCTAAGGTTCGGCCAGGTGAGAGGAGAGTGGGCTCATACGATGTTGATTATGAAGTTTTCCAAAAAGCTATTGTTGGAGGTTTTGTACCACCATTTCCATCATCAGAGGATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAGTTGGAGTGCCTTAAGGCGTAAAGTTTCCTCTTCTCATATGAAGGAGATTGTCACAGCCCCTAAGTCATCCCTTCCAAGGGTTTTTTCCGATTCCATGTTGTGTATTCATTCAACAAAAAGTTCATCTCCATCCTCGTCATCCATATCATCATCGTCGAACTCGTATGTCTCACCTGATTCTGTTTCTTCTGATTCCAGTTCTCATTTGAAGTTCTTGTCAGAGGTATCCCCAGATAACTCTACAGTTTTGACTGCCAATCCAGTGTCTTCATCTTTGTCCAAGTTTTCTAATTTGACCCTGTTGCCAAGTTCTACTTCTCAACCGGTGTCTAATAGTTCTGATATCCGTGATTTCAAGTTGTCACATCCTCATTCTAACCCGGCTCCATTACCTTCGAAGAAACCATCATCTTCCTTGGCCGAACGCAGGGGTAGTTTGTCGCAGTCTTTGCAGTTGCCTCTAATGAATGATAAGACAGAGATAACAAATAAACCATTGCCTTCGCCTTTGCATGCTAATCGACAAGATGGGGTTCTTGAGAATGGCAAATTAAGCTGTTTGCAACAATCAGATAGTACATATAGTTCTTGTGAAACCAACAACCATGTCAAGGATACAGGCTGGGATTCAATTAATGTGGACTACAAGAAGTCTTTGCCTGTTAGAAACTCTGGTGAGTCATCGATATATGGTTCCTCAAGGGGATACTTGAAGCCTACATCATCAGATTCACTTCATAATGGGGATGACTCATTGCAGTGCAAGATATCTCAAACTTTGGTATATCACTGGCCCAATTTGGAAAAGATCGAGACTTTTGGTGCAAGTCATCTGGAATCTAAAGCTGCTTTTNNNNNNNNNNCTTTTGATGTAAATGAGGGAAATATTTTATATTTTTGGATAGGGAGGTCTTTCAGTTGTGATGCTTCACAGGGTCAGTTAGTCAGAGATATAAAGTCAGATTTTGTTGGAGAATTTGACTGGAATCGAATTGGTTGTGATGTTCTTACTCGGTTAAGTTTGCCGAAGAATACTATTGTGAAGGTTGTTAGACAGAACGAAGAACCACGAGAGTTCCACTCTTTGATGAGTTCATTGTAG 2550 0.4431 MVGNDDGGDRRMFWRSASWSSSRTGTASSNNPSGEADPNSCGGDTVTGQNRKFCPPPLTPRSQQSSKARSSLPPLQPLSIARRSLDEWPQASSDDIGEWLPQQPPLTPGGGMRGNNGERLKLDLSSIQMNNDRNCNSGSNGSGNNNSCSNNGVSGLLKRDRIAFFDKECSKVAEHVYLGGDAVAKNRDILKQNGITHILNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVFVHCCQGVSRSTSLVIAXXXXLMWREGQSFDDAFQLVKAARGIADPNMGFACQLLQCQKRVHAVPLSPTSLLRMYRMAPHSPYDPLHLVPKMLTDPSPSALDSRGAFFVHIPTAIFVWIGMKCDAIMERDARGAVGQIIRYEKAEGPVQVIKEAHEPADFWEVFSRFLPLMDKSYSKIESIKSSAKVRPGERRVGSYDVDYEVFQKAIVGGFVPPFPSSEDEHETHLPARESSWSALRRKVSSSHMKEIVTAPKSSLPRVFSDSMLCIHSTKSSSPSSSSISSSSNSYVSPDSVSSDSSSHLKFLSEVSPDNSTVLTANPVSSSLSKFSNLTLLPSSTSQPVSNSSDIRDFKLSHPHSNPAPLPSKKPSSSLAERRGSLSQSLQLPLMNDKTEITNKPLPSPLHANRQDGVLENGKLSCLQQSDSTYSSCETNNHVKDTGWDSINVDYKKSLPVRNSGESSIYGSSRGYLKPTSSDSLHNGDDSLQCKISQTLVYHWPNLEKIETFGASHLESKAAFXXXXFDVNEGNILYFWIGRSFSCDASQGQLVRDIKSDFVGEFDWNRIGCDVLTRLSLPKNTIVKVVRQNEEPREFHSLMSSL 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211628g00007 849 PANTHER MKPA PROTEIN 8 845 - -
Stsc211628g00007 849 MobiDBLite consensus disorder prediction 586 660 - -
Stsc211628g00007 849 Pfam Dual specificity phosphatase, catalytic domain 176 309 IPR000340 GO:0008138|GO:0016311
Stsc211628g00007 849 MobiDBLite consensus disorder prediction 15 47 - -
Stsc211628g00007 849 MobiDBLite consensus disorder prediction 1 150 - -
Stsc211628g00007 849 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 161 312 IPR029021 -
Stsc211628g00007 849 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 227 291 IPR000387 GO:0016311|GO:0016791
Stsc211628g00007 849 Gene3D Protein tyrosine phosphatase superfamily 151 313 IPR029021 -
Stsc211628g00007 849 SUPERFAMILY Actin depolymerizing proteins 319 427 - -
Stsc211628g00007 849 CDD DSP 169 306 - -
Stsc211628g00007 849 ProSiteProfiles Dual specificity protein phosphatase domain profile. 168 313 IPR020422 GO:0006470|GO:0008138
Stsc211628g00007 849 MobiDBLite consensus disorder prediction 121 150 - -
Stsc211628g00007 849 MobiDBLite consensus disorder prediction 56 73 - -
Stsc211628g00007 849 Gene3D Severin 323 418 IPR029006 -
Stsc211628g00007 849 MobiDBLite consensus disorder prediction 621 652 - -
Stsc211628g00007 849 ProSitePatterns Tyrosine specific protein phosphatases active site. 252 262 IPR016130 GO:0016311|GO:0016791
Stsc211628g00007 849 SMART dsp_5 168 310 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211628g00007 Stsc-Chr211628 21210 25148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211628g00007 2 204 Protein tyrosine phosphatase (PTP) family AT3G55270 53.659 7.35e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211628g00007 - - vum:124838930 1026.16