LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc211628g00006	ATGGCTCCCGCAAAGGCTGATAATACAAAAAAGGCTGACCCTAAAGCTCAGGCTTTGAAGGCAGCCAAGGCTGTTAAAGCAGGTGGAAAAGTCTTTAAAAAGAAAGCTCAGAAGATCAGGACCAAAGTCACATTTCACCGACCGAAGACCCTCAAGAAGGATAGGAACCCTAAGTATCCTCGCATCAGTGCACCACCGAGAAACAAGTTGGACCATTATCAGATTCTTAAGTTTCCTCTTACCACAGAGTCTGCAATGAAGAAGATCGAGGATAACAATACACTGGTTTTCATTGTTGACCTCCGTGCTGACAAAAAGAAGATTAAAGATGCCGTCAAGAAAATGTACGACATTCAGGCCAAGAAAGTTAATACTTTGATCAGGCCGGATGGAACGAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAACAAAATTGGCATAATCTAA	468	0.4274	MAPAKADNTKKADPKAQALKAAKAVKAGGKVFKKKAQKIRTKVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc211628g00006	155	ProSitePatterns	Ribosomal protein L23 signature.	133	148	IPR001014	GO:0019843
	Stsc211628g00006	155	PANTHER	60S RIBOSOMAL PROTEIN L23A	7	155	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211628g00006	155	NCBIfam	50S ribosomal protein L23	79	155	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211628g00006	155	Hamap	50S ribosomal protein L23 [rplW].	75	155	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211628g00006	155	Pfam	Ribosomal protein L23, N-terminal domain	15	65	IPR005633	-
	Stsc211628g00006	155	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	72	148	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211628g00006	155	Pfam	Ribosomal protein L23	75	137	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Stsc211628g00006	155	Gene3D	-	36	155	IPR012677	-
	Stsc211628g00006	155	FunFam	60S ribosomal protein L23a	34	155	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc211628g00006	Stsc-Chr211628	18450	20268	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc211628g00006	1	155	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	80.645	1.52e-69	205

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc211628g00006	K02893		-	gmx:100777933	256.914