Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211628g00004 ATGCCTTTTCGAAATTACAAGGAGACTGCTGCATTTCAAGTTGAGAAGGATTCTTCAGCAAGTCATAGCTTCAAAGAACCATCCTCCCCTAAAATGTTGAAGTCACCTTCTCTTCAAAGAGTATCTAATGTATCCCGCCCCCCAGATGGAAGCTTTAACTTGCTTGAATCACCAAAGGTCCGGAGCCCACCACCTGAGAAGATGGTGGAAAATGGTCAGGCTCTGGATGGAGCAGATAAGGAGCCATCAATAAGAAGGCAGGATAGTTTTGAGATGAGACTTCCGGAGTTACCCAAGATTGATGTTCAGTCTCTGCATCGTCAAAAATCAAATGGTTCTGACCCAGAATCTCCTGTTTCTCCCCTTTTAACATCTGATCCCAAGAGCGAACGCTCCCATTCACAGACTTTTAGCCGACCACAGAGTTATTCTGATGATCTTTCAGCTGAAAAGAGAAAATTGAAGGATACAAGGCATCAAAAACCACCATCACTTAGGAAGCTGGCTGAGCTTAGCTTCGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCTCTTCTTGCTTATGTTATTGGTCTTGTAGTGACAGCTTACTATAATATTGATAAAGAACATCACTTACGATGGGAAGTAAACAAGTGGTGTTTAGCCATTGGCTGCATGGGTATTGTGACAGTAATTGCCAACTTCTTACAGCATTTCTACTTTGGTATCATGGGGGAGAAAATGACAGAAAGGGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTAGGGTGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCTTTTAGCAATCGGCTGTCTATATTTATTCAGGACAGTGCTGCAATTATTGTTGGTCTTCTAATTGGTGCCTTACTGCAGTGGCAATTAGCACTTGTGGCTTTGGCAACCCTTCCAATTCTCTGTGTTGCTGCAATTGCCCAGAAAATGTGGCTTGCTGGATTTTCAAGGGGCATACAGGAGATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTTAGAAACATTTACACCGTTGTCGCATTTTGTGCTGGTAATAAGGTGATGGAACTCTATAGGCTGCAGTTGAAGAAAATATTTAGGAAGAGCTTTCTTCATGGGATGGCAATCGGTTTTGCATTTGGCTTTTCACAGTTCCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGGAATATGTATAAAAAAAGGCTATATGGAACTATCTACTGCACTCAAGGAGTACATGGTTTTCTCTTTTGCCACATTTGCGCTTGTAGAGCCTTTTGGATTGGCTCCTTACATCCTTAAACGACGGAAGTCTCTCATATCAGTGTTTGAGATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCGAATGTACATGGAAGAATTGAGTTAAAAAATGTTGATTTCTGTTACCCAACTCGTCCAGAAGTTTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGTGGGCAAACAGTTGCTGTTGTGGGAGTTTCTGGGTCAGGAAAGAGCACAATTATATCTTTGATTGAGAGGTTTTACGATCCAGTTTCTGGCCAAGTTTTACTTGATGGAAGGGATTTAAAGGTCTACAACTTGAGATGGCTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAACCTATTATCTTCTCAACAACCATAAGGGAAAACATCATATATGCAAGGCACAATGCCAGCGAAGCTGAGATGAAAGAGGCTGCGAGAATAGCAAATGCCCATCACTTCATTAGCAGTTTGCCTCATGGTTATGACACTCACGTTGGGATGCGAGGTGTTGACTTAACTCCTGGACAAAAACAGAGAATTGCAATTGCAAGGGTCGTGCTGAAAAATGCTCCTATTTTGTTGTTGGATGAAGCAAGCTCATCGATTGAATCCGAGTCAAGCCGGGTGGTGCAAGAAGCTCTCGACACGTTAATAATGGGGAACAAGACCACCATTTTAATTGCACATAGGGCTGCAATGATGAGGCATGTGGACAATATCGTAGTGCTTAACGGGGGACGGATAGTGGAGGAGGGGACTCATGATTCGTTGATGGCTAAGAATGGTCTGTATGTCCGATTAATGCAACCTCATTTTGGTAAGGCTTTGCGTCAGCATCGGCTTGTTTAG 2259 0.4285 MPFRNYKETAAFQVEKDSSASHSFKEPSSPKMLKSPSLQRVSNVSRPPDGSFNLLESPKVRSPPPEKMVENGQALDGADKEPSIRRQDSFEMRLPELPKIDVQSLHRQKSNGSDPESPVSPLLTSDPKSERSHSQTFSRPQSYSDDLSAEKRKLKDTRHQKPPSLRKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYNIDKEHHLRWEVNKWCLAIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAIIVGLLIGALLQWQLALVALATLPILCVAAIAQKMWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFRKSFLHGMAIGFAFGFSQFLLFACNALLLWYTGICIKKGYMELSTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVHGRIELKNVDFCYPTRPEVLVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVSGQVLLDGRDLKVYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGTHDSLMAKNGLYVRLMQPHFGKALRQHRLV 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211628g00004 752 MobiDBLite consensus disorder prediction 104 144 - -
Stsc211628g00004 752 Coils Coil 752 752 - -
Stsc211628g00004 752 MobiDBLite consensus disorder prediction 12 50 - -
Stsc211628g00004 752 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 739 IPR027417 -
Stsc211628g00004 752 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 503 740 IPR003439 GO:0005524
Stsc211628g00004 752 SUPERFAMILY ABC transporter transmembrane region 162 488 IPR036640 GO:0005524|GO:0016020
Stsc211628g00004 752 Gene3D - 493 740 IPR027417 -
Stsc211628g00004 752 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 180 472 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211628g00004 752 FunFam ABC transporter B family member 6 120 348 - -
Stsc211628g00004 752 MobiDBLite consensus disorder prediction 79 103 - -
Stsc211628g00004 752 SMART AAA_5 530 717 IPR003593 GO:0016887
Stsc211628g00004 752 MobiDBLite consensus disorder prediction 145 161 - -
Stsc211628g00004 752 Gene3D ABC transporter type 1, transmembrane domain 470 492 IPR036640 GO:0005524|GO:0016020
Stsc211628g00004 752 MobiDBLite consensus disorder prediction 1 161 - -
Stsc211628g00004 752 FunFam ABC transporter B family member 20 493 742 - -
Stsc211628g00004 752 Pfam ABC transporter 521 669 IPR003439 GO:0005524
Stsc211628g00004 752 Gene3D ABC transporter type 1, transmembrane domain 142 466 IPR036640 GO:0005524|GO:0016020
Stsc211628g00004 752 FunFam ABC transporter B family member 6 350 500 - -
Stsc211628g00004 752 Pfam ABC transporter transmembrane region 185 449 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211628g00004 752 CDD ABC_6TM_Pgp_ABCB1_D2_like 175 486 - -
Stsc211628g00004 752 PANTHER ABC TRANSPORTER B FAMILY 143 739 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211628g00004 Stsc-Chr211628 6643 9692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211628g00004 120 739 Calmodulin-binding Proteins AT2G36910 40.635 5.77e-163 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211628g00004 K05658 - gmx:100789116 1310.82