Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211628g00003 ATGGCAGTCCAAAGAATTGCAATTGGGTCTCCTGGAGAGGCTGGTCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATTCTTTTCATTGCTCATTTTTGTTTTTGCTGGTCAAGGCTCTGGAATGGCTTATACTAAACTTACAAACAATGGACCAGGAACACCATCTGGCCTGATAGCTGCATCATTGTCCCATGCATTTGGTCTTATGGTGGCTGTCTCTGTTGGTGCAAACATTTCTGGTGGCCATGTGAACCCTGCTGTCACTTTTGGTGCCTTCATTGGAGGAAACATAACCCTTTTGAGGAGCATTTTGTATTGGATTGCACAGTTGCTTGGTTCAGTTTTTGCTTGCATTCTTCTCAAGTCTGCTACTGGAGGAATGGAAACAACAGGTTTCTCATTATCCTCTGGTGTGTCAGTTTGGAATGCATTGGTTTTTGAAATAGTGATGACATTTGGGTTAGTGTACACAGTTTATGGCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGGATTATAGCCCCAATTGCAATTGGACTCATTGTGGGTGCAAACATCTTAGTAGGTGGTCCATTTGATGGTGCATCAATGAACCCAGCAGTGTCATTTGGTCCTGCTGTTGTTAGTTGGTCATGGACTCATCATTGGGTCTATTGGGTTGGTCCCTTCATTGGTGCTGCTATTGCTGCCATTATGTATGATAATATCTTCATTGGTGATGATGGTCAGGAACCCCTTTCTAGCACTAGTGACTATTAG 762 0.437 MAVQRIAIGSPGEAGQPDAIRAAFAEFFSLLIFVFAGQGSGMAYTKLTNNGPGTPSGLIAASLSHAFGLMVAVSVGANISGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVFACILLKSATGGMETTGFSLSSGVSVWNALVFEIVMTFGLVYTVYGTAVDPKKGNVGIIAPIAIGLIVGANILVGGPFDGASMNPAVSFGPAVVSWSWTHHWVYWVGPFIGAAIAAIMYDNIFIGDDGQEPLSSTSDY 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211628g00003 253 FunFam Probable aquaporin TIP1-1 4 251 - -
Stsc211628g00003 253 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Stsc211628g00003 253 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc211628g00003 253 Gene3D Glycerol uptake facilitator protein. 4 251 IPR023271 -
Stsc211628g00003 253 SUPERFAMILY Aquaporin-like 17 240 IPR023271 -
Stsc211628g00003 253 PANTHER AQUAPORIN-8 6 240 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211628g00003 Stsc-Chr211628 4260 5326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211628g00003 1 251 Major Intrinsic Protein MIP AT4G01470 82.470 3.66e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211628g00003 K09873 - gmx:100788583 468.388