Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211627g00001 ATGTCCATGTTAGAGCAAGCAAAATCAAATGGTTTCTCACCAGAAAACACTGAGATCCTCTCCAATGATCAACCCCTCTTGATACCAATTGATTGCAAGTGCAGCAAAGATGGCTTCTTCTATGCTGAGTTGACCAAAACCACCATCAAAGGTGAGAGCTTCTATGGCATAGCTGAATCACTTGAAGGCTTAACCACCTGTAAGGCCATAAAAGATAGAAACCCCGGCGTGCCGCCTTCGAACCTCAACGGAGAATTCAAGTTGCTGGTTCCATTAAGATGTGCATGTCCAGTTTCATCTTCTCAGGGACAGAGGATTCTGCTTTCTTACCCTGTAAGTAAAGGCGATACGATTTCAAATTTGGCTTCAAAGTTCAATGTTACTATAGAATCCATAACTTCTACAAATAACTTATCAGAAGGGTTTCGAATTGGAACTCAAAGCCTTACACCCTTTACCACTCTTTTGATTCCATTGTTAAATGATAATCCTGTGGCTAAACCCTCGAATAACCCGGGTTTTCGGGTGATTAGTCCACAGAAGAAAACAAAAATGTGGAGAACTGAATTGTGTATAGGCCTAGCTGGAGTTGCACTTGGAATCTTGATTGCTTCATTAGTAGGATTCTCTTTCATCCGATTGAAGAGCAAGAAGCAGAGTGGTGTGAAGAACAGTAAGTGTAACAAAGAGGTAGATATGGAGCTTCAACATCTGAATCTCAGTGTAAGAACAACCAGTGACAAAAAGGTCTCATTCGAGGTTCCAAATGACGGGAAGATCCTCGAAGCTTCGACGCCGCGAAAGATGTTTCTTGAGACATACTCAACGGAGGAAATCCGCAAGGCAACAGATGATTTCAGCTCAAGCAATCACATTGAGGGGCCAGTGTTCCATGGAAGATTGAATGGCAAGAACATAGCAATAAAAAGAACAAGAAACGACATGGTTTCGAAGATAGATTTCGGCCTCTTCCACAACTCAATTCACAGGCACCCCAACATTCTCATGCTTCTTGGGACAACAACAAGCCTGCTACAAGAGGAGGAGGGGGATCAAGATTCCTACCTGGTCTTCGAGTATGCGAAAAACGGATCCTTGAAAGACTGGCTTCACGGTGGATTGGCAATCAAGAATCAGTTCATAGCATCCTGCTACTGTTTCTTGACATGGAGCCAGAGGCTCCGGATCTGCCTCGACGTCGCGAGAGCCTTGCAGTACATGCACCATGTCATGATCCCAAGCTATGTTCACAGGAACATAAAGAGTAGGAACATCTTCTTGGATGAAGAGTTTGGTGCAAAAGTAGGGAACTTCGGTATGGCAATGTGTGGTGAGAATGAGACTGAGGACCCACATTTCTATTCCACAAACCCTGCTTCTTGGAGCCTTGGGTATCTGGCACCAGAATATGTTCACCAAGGTATTGTTTCACCGGGAATTGATGTGTATTCTTATGGGGTGGTTTTGTTGGAGGTTTTGTCAGGTCAGACACCAATAAGCAGGCCTAATGAGAAGGGTGAAGGGAGTGTTTGGCTGACGGATAAGATCCGGTGGATTTTGGGGTCGGAGAATAGTGGGAATGAGCTGAGGGAGTGGATTGATGGGGCTTTAGGGGGGAACTATTCGGTTGATGCAGCTGTGGAGTTGGCTAATATTGCAAGGGCTTGTGTGGAGGATGAGGCTTGTTTGAGACCAAGTGCTAATGAAATTGTTGAGAGGATTTCAAGATTGGTGGAGGACTTGCCGGATGGAGAACACATGTTGATCAGTGAAAGTTCTAGCAAGCCATTGGTTAATGCACTATGA 1806 0.4463 MSMLEQAKSNGFSPENTEILSNDQPLLIPIDCKCSKDGFFYAELTKTTIKGESFYGIAESLEGLTTCKAIKDRNPGVPPSNLNGEFKLLVPLRCACPVSSSQGQRILLSYPVSKGDTISNLASKFNVTIESITSTNNLSEGFRIGTQSLTPFTTLLIPLLNDNPVAKPSNNPGFRVISPQKKTKMWRTELCIGLAGVALGILIASLVGFSFIRLKSKKQSGVKNSKCNKEVDMELQHLNLSVRTTSDKKVSFEVPNDGKILEASTPRKMFLETYSTEEIRKATDDFSSSNHIEGPVFHGRLNGKNIAIKRTRNDMVSKIDFGLFHNSIHRHPNILMLLGTTTSLLQEEEGDQDSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWSQRLRICLDVARALQYMHHVMIPSYVHRNIKSRNIFLDEEFGAKVGNFGMAMCGENETEDPHFYSTNPASWSLGYLAPEYVHQGIVSPGIDVYSYGVVLLEVLSGQTPISRPNEKGEGSVWLTDKIRWILGSENSGNELREWIDGALGGNYSVDAAVELANIARACVEDEACLRPSANEIVERISRLVEDLPDGEHMLISESSSKPLVNAL 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211627g00001 601 Gene3D LysM domain 107 158 IPR036779 -
Stsc211627g00001 601 Gene3D Transferase(Phosphotransferase) domain 1 361 588 - -
Stsc211627g00001 601 FunFam PTI1-like tyrosine-protein kinase 3 361 587 - -
Stsc211627g00001 601 SUPERFAMILY LysM domain 109 138 IPR036779 -
Stsc211627g00001 601 Pfam Protein kinase domain 301 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211627g00001 601 Gene3D Phosphorylase Kinase; domain 1 260 360 - -
Stsc211627g00001 601 Pfam LysM domain 110 158 IPR018392 -
Stsc211627g00001 601 ProSiteProfiles LysM domain profile. 44 90 IPR018392 -
Stsc211627g00001 601 SUPERFAMILY Protein kinase-like (PK-like) 268 582 IPR011009 -
Stsc211627g00001 601 CDD LysM 109 144 IPR018392 -
Stsc211627g00001 601 ProSiteProfiles Protein kinase domain profile. 265 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211627g00001 601 ProSiteProfiles LysM domain profile. 108 157 IPR018392 -
Stsc211627g00001 601 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 5 581 - -
Stsc211627g00001 601 SMART LysM_2 45 91 IPR018392 -
Stsc211627g00001 601 SMART LysM_2 109 158 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211627g00001 Stsc-Chr211627 9922 12051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211627g00001 16 598 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 42.295 2.55e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc211627g00001 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211627g00001 - - gmx:100816082 801.971