Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211626g00001 ATGGCAAAGATAAATAATTTTCAATACTTGTGTCTCATACTCCTAATAACGGTTGCTGATTTTGAAAGTGTTGGCGCTTTTGATCAACCACTCCTAGGAGGAAAGAAATTGATCATTGGGATACCCTTCAAAACTGGCTTCACTGAATTTGTGGAAGCCAAGCTGGATCCTACAACACACCAATTGGTCCAAGTCACTGGCTACTCCATTGATATCTTCCATGCCACCAAGGACTTTATCTCAACCTACTACGGTTTCAATGTCTCCTACGAGTTTCGTCCATTCATCAACAATGATACCGGTCTAAGTGCTGGCTCTTATGACAAACTTGTTGAACAAGTTTATAACCACACGTATGATGCGGTGGTGGGAGACGTATCAATTGTGGGTCTGAGATCGAGATATGTGGATTTTACGTTACCATATGCGGAGTCAGGTGTGAGGATGCTGATTCGAGTTGGGAATGGCGGCAACCGCCACCTAAACATGTGGATATTTCTAAGGCCATTTAGTTGGGATCTATGGCTCTCCATCATTCTAGCCTGTGCCTTTATAGGAGCTTCAATAACATTCATGGAACGTCGTAATAACATGCATAATAATAATAATCATCAAGATCAAGAACCTTCACAAGGCTCTCCACCTTCCCATCATCAACAATTCAAAGGGATATCAATAATATGGCTTCCTATCACTCAACTCTTCCTCCCTCAGAGAGAATCGGTAGGCAAGAATTGCTCCAAGTTTGTGTTGGTGGTATGGTTGATATTGGGGTTTGTGTTGATGCAAAGTTACACAGCAAACTTGTCATCCATGTTGACATTGGATCAATTGCAGCCAACATATCTAAGTGTGGATGATTTGAGAACAAATGGTGTCAACATAGGGTACCCAACGGACTCCTATCTATCTGAGGTGCTGGTCGACAAATTCAAATTCAATAAATCAAAGCTAAAGAATTTGACAAAAATGGAAGACTATCAGAAGGCTTTAGACAAAGGAACTAGAAACGGTGGCGTTGATGTTATATTTGAGGAGATACCATACATCAAGATGTTCCTCAAAAAACATGGTTCTAACTATATGATGGTTGGGCCTCACTATCGTACCGATGGACTTGGCTTTGCATTTCCAATAAACTCCAACTTAACCTCTTACTTTTCAAGAGCTATATTGAACATAACACAGAATGATAGCTTTATGCAACCGATTGAGAGGCAGTATTTTGGAAGCAGTGACTATGACTTCGAAGATGATTCAGATCAATTGTCAACGTCAACGTCATCAGATACTCCTAGCCTTAACTCAGAGAGTTTTGCGGGGTTGTTCCTCATCACAGGAGTTGCCACATTCTTAGCTTTGGTAGTATCAGAAAGCAATATTTGGACAAAACCCGTAACACTAGCCAAAGTGTACAGCCAAAAGTTTCTTTTCTCTCCTAGTTGGAGAAAATCTAAGCAATCCATAGATGGTTCTTCAACAAGTAAAGGGAATAAAATATGTTGTGTCAGTGAACCAAATAGCATTCCTGAAAGTCCCTCAAGGTTTCCAAATTCTAATCTAGTTCTAGAAACAGTTGTATAG 1584 0.4028 MAKINNFQYLCLILLITVADFESVGAFDQPLLGGKKLIIGIPFKTGFTEFVEAKLDPTTHQLVQVTGYSIDIFHATKDFISTYYGFNVSYEFRPFINNDTGLSAGSYDKLVEQVYNHTYDAVVGDVSIVGLRSRYVDFTLPYAESGVRMLIRVGNGGNRHLNMWIFLRPFSWDLWLSIILACAFIGASITFMERRNNMHNNNNHQDQEPSQGSPPSHHQQFKGISIIWLPITQLFLPQRESVGKNCSKFVLVVWLILGFVLMQSYTANLSSMLTLDQLQPTYLSVDDLRTNGVNIGYPTDSYLSEVLVDKFKFNKSKLKNLTKMEDYQKALDKGTRNGGVDVIFEEIPYIKMFLKKHGSNYMMVGPHYRTDGLGFAFPINSNLTSYFSRAILNITQNDSFMQPIERQYFGSSDYDFEDDSDQLSTSTSSDTPSLNSESFAGLFLITGVATFLALVVSESNIWTKPVTLAKVYSQKFLFSPSWRKSKQSIDGSSTSKGNKICCVSEPNSIPESPSRFPNSNLVLETVV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211626g00001 527 Pfam Bacterial extracellular solute-binding proteins, family 3 64 410 IPR001638 -
Stsc211626g00001 527 Gene3D - 161 324 - -
Stsc211626g00001 527 SUPERFAMILY Periplasmic binding protein-like II 11 411 - -
Stsc211626g00001 527 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 460 IPR015683 -
Stsc211626g00001 527 MobiDBLite consensus disorder prediction 198 219 - -
Stsc211626g00001 527 Gene3D - 31 160 - -
Stsc211626g00001 527 Pfam Ligand-gated ion channel 411 449 IPR001320 GO:0015276|GO:0016020
Stsc211626g00001 527 SMART GluR_14 36 411 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211626g00001 Stsc-Chr211626 1866 3893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211626g00001 34 516 Ion Channels AT2G29120 35.671 3.55e-77 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211626g00001 K05387 - aip:107641909 805.823