Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211625g00010 ATGGCTTTCCACGACCACCATATGCAGCACGAGATAGCTTTCCAGCGCTTCACGGAGGAGCAAGAGCTAACAACAGAGAATAGAGACATGCATCAGCAGAGGGCGGCGGGGGTGGTTGCGCCGCCTCCGACGTGGCTCAACAACCCTAGTACTCATCATCAGCATCAGCAACAGCATCGGCAGCAGCAGAATTTCCTACACCAGCTTCAGCCACAACCACCACCACCGGAGACAACAACGACGACGGAGAAGAGCATGGATCGGAACACAAGTTTTGAATCGTCGGATGAATTGAGAGAATACAAAGCAGACATCTTAGGACACCCGCTGTACGACCAGCTGCTGTCGGCTCACGTTTCTTGCCTGAGAATTGCCACACCGGTTGACCAGCTTCCAAGAATCGACGCTCAGTTGCATCAGTCGCAGCGCGTGGTGGATAAGTACTCCGCCATCGCAAACCCCGTCGTCGATGACAAGGAGCTCGATCACTTCATGACACATTATGTGCTGCTGCTATGTGCGTTCAAAGAGCAGTTGCAGCAACATGTTCGTGTTCATGCCATGGAAGCAGTCATGGCTTGTTGGGATCTCGAGCAGTCTCTACAAAGCTTGACAGGTGTATCTCCTGGGGAAGGAACGGGGGCAACAATGTCCGACGACGAAGATGAGCAAGCGGAGAGCAACGGCGGCGGTGGTAGCGGGAGCATGTACGAAGGAAGCTTTGAGGGCGGTGTTGATAGCCTGGGGTTTGGTCCTCTTGTTCCTACCGAGAGTGAGAGATCTTTGATGGAGAGAGTGAGGCATGAACTGAAGCATGAACTTAAACAGGGTTATAAGGAGAAGATTGTTGACATCAGAGAAGAGATTCTCCGTAAGAGAAGAGCTGGCAAGCTCCCTGGTGACACCACCTCCCTTCTCAAAGCTTGGTGGCAATCTCATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCGAGGCTGGTGCAGGAAACAGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCTTCCTCTAGTAACTCTAAAACCAAGCGCAAGAGTGCAGGAGGTGAGAGCAGTAACCAAAGCTTCATGTGA 1134 0.5106 MAFHDHHMQHEIAFQRFTEEQELTTENRDMHQQRAAGVVAPPPTWLNNPSTHHQHQQQHRQQQNFLHQLQPQPPPPETTTTTEKSMDRNTSFESSDELREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLHQSQRVVDKYSAIANPVVDDKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGGGGSGSMYEGSFEGGVDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKTKRKSAGGESSNQSFM 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211625g00010 377 Pfam KNOX2 domain 155 205 IPR005541 GO:0003677|GO:0005634
Stsc211625g00010 377 ProSiteProfiles 'Homeobox' domain profile. 289 352 IPR001356 GO:0003677
Stsc211625g00010 377 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 362 - -
Stsc211625g00010 377 SMART KNOX1_2 99 143 IPR005540 GO:0003677|GO:0005634
Stsc211625g00010 377 SMART KNOX2_2 151 206 IPR005541 GO:0003677|GO:0005634
Stsc211625g00010 377 MobiDBLite consensus disorder prediction 205 238 - -
Stsc211625g00010 377 SMART HOX_1 291 356 IPR001356 GO:0003677
Stsc211625g00010 377 ProSiteProfiles ELK domain profile. 269 289 IPR005539 GO:0003677
Stsc211625g00010 377 MobiDBLite consensus disorder prediction 28 95 - -
Stsc211625g00010 377 SMART ELK_2 269 290 IPR005539 GO:0003677
Stsc211625g00010 377 SUPERFAMILY Homeodomain-like 291 356 IPR009057 -
Stsc211625g00010 377 MobiDBLite consensus disorder prediction 44 68 - -
Stsc211625g00010 377 CDD homeodomain 292 353 IPR001356 GO:0003677
Stsc211625g00010 377 FunFam homeobox protein knotted-1-like 3 isoform X1 290 351 - -
Stsc211625g00010 377 Pfam Homeobox KN domain 309 348 IPR008422 GO:0003677|GO:0006355
Stsc211625g00010 377 Pfam KNOX1 domain 101 142 IPR005540 GO:0003677|GO:0005634
Stsc211625g00010 377 Gene3D - 295 371 - -
Stsc211625g00010 377 MobiDBLite consensus disorder prediction 346 377 - -
Stsc211625g00010 377 Pfam ELK domain 269 290 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211625g00010 Stsc-Chr211625 64711 68433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211625g00010 101 374 Homeobox Transcription Factor Family AT5G11060 80.216 3.76e-162 458
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc211625g00010 KNOX2 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211625g00010 - - gmx:100781997 564.303