Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211625g00004 ATGCCGGACGGAGAATCCTCCGCCGTCACCTCATCGTCGGAGCTGGAGCTCCATTTAAGCCTCTCTGATCAGTTGCTCCAGAACCTTAGTCTCTCTCAAGTCAAAGATCATGACGACCCAGCCGTTAAGAAAGATCCCAAGAAAATTGCTAGAAGGTACCAGTTGGAGCTGTGCAAGAAAGCATTAGAGGAAAATATAATTGTATATTTGGGGACAGGTTGTGGGAAGACCCACATTGCTGTGCTGCTTATGCATGAAATGGGTCATTTGATAAGGAAGCCCCAGAAAAATGTATGTGTTTTTCTTGCCCCCACTGTGGCGCTTGTTCATCAGCAAGCAAAGGTTATAAAAGACTCTACTGATTTTAAGGTTGGGATTTTCTGTGGGAGCTCCAAGCGCTTGAAATGTCATCATGATTGGGAGCAGGAAATTGGACAATATGAGGTTTTTGTCATGACCCCAGACATATTATTGCACAACTTATCTCATTGTTTCATTAGGATGGAGATGATTTCACTTTTGATATTTGATGAATGTCATCATGCTCAAGCCAAAAGCAACCATCCTTATGCAGAAATCATGAAAGTCTTCTACAAAAATAATCCGAAAAGTGCTCCTCGTATTTTTGGCATGACTGCTTCCCCAGTTGTAGGAAAAGGGGCTTCCAGTGAAGCAAATCTTGCAAAAAGCATCAATAGTCTTGAACAAATACTTGATGCTAAGGTATACTCAGTTGAAGACAGGGAATTGGAATCTTTTGTAACCAATGCAACGATTTCTGTATATCATTATAGCTCAGTTGCAAATGGGACAACTAGCTTGTATACAGCTTACTATGCAGGACTTGAGGAGATCAAACATCAGTGCATAGCAACCCTCGGTAGGAATATAGAAGATCACCAGAATCGGATGAACACAAAAAAACTTCTAAACCGGATACATGATAATGTTGTTTTCTGTCTGAGGAATCTTGGCATTTGGGGAGGACTGCAAGCTAGTCATATTCTTTTGAGGGGTGATCGTTCCGAGAGGCACGAATTAGTGGAGGCAGAAGGAAATTCAAGTGATGACTCTGTGTGTGATAAATATCTGTCTCAGGCGGCTGAACTCTTTAACTCACTTCTGAAAGGTGACAGTTTATCTGATTTATCTTCTACGGAAATATTGAGAGAGCCCTTTTTCTCATCAAAACTTTTGTGCCTCGTTCAGATTCTGTCCTCCTTTAGGATGCACCAAAACCCAAAATGTATCATTTTTGTTAATAGAATCGTGACTGCCAGATCCTTGTCATACATACTTAAGAAGCTGAAACTTCTAACACAGTGGAGGAGTGATTTTCTAGTAGGAGTCCATGCTGGATTGAAGAGTATGTCGCGCAAAACCATGAACATCATTGTTGAGAAGTTTCGCTCTGGTGAGTTGAATATATTGGTTGCAACAAAAGTGGGTGAAGAAGGACTTGACATTCAGACTTGTTGCCTTGTCATACGGTTTGATCTTCCTGAAACTGTTGCCAGCTTTATACAGTCAAGAGGCCGTGCACGGATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGACAATAAGAAGGACCTTGATTTAATTGAGGGTTTTGAGAAAGATGAATGCCGAATGAATATGGAAATTGCTGATCGCACGTCAACTGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTAGATTCGTCCGGTGCTTCTGTCAGTTCTGGATATAGTATTTCGTTACTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTTCTTTGACCCCAAGCCAAACTTTTATTACTTTGATGAAAAAGATGGGATCGCCTGCCATATAATATTTCCATCCAATGCACCAATCCACTTAATTGTCGGTTCACCACAGTTGTCTATGGAAGCTTCCAAGAAGGATGCTTGCCTGAAAGCAATCCAAGTACTATATGAAAAAGGTGCTTTAAGTGATTGTCTTTTGCCAAAGCAAGAGACCGCAGAGCCAGACGAGAAGGATTCAAGCCCAAATACGGATGGCTGCGAAGATGACAATTCAAGAGGAGAATTACATCAGATGTTAGTTCCTTCTATCTTTAGAAAATCTTGGATAAACGAAGAGGAAAATGTTCATCTCAACTCATACTACATAAAATTTTGTCCCTTGCCAGAGGATAGGGTTTACAAAAAGTTTGGTCTATTCATGATGACATGTCTTCCAGCAGAGGCTGAGAAACTTAAACTTGATCTTCATCTTGCTCATGGTAGATCTGTTATGACAACATTTGTTCCATTTGGAGTTATAGAATTTGACAAAGATGAGATTAAGATGGCTGAACATTTTCAAGAGATGTTCCTTAAAATTATTCTTGACCGATCAGAATTTGTTTCTGATCTCGTAACCCTGACTAAGGGTGCTGAATCTCACAGCAGCTCATCAACCTTCTACCTTATGCTTCCAGTGAATTTGCATGAATATGAAAATATCATGACTGTGGACTGGAAGACTGTGAGGAGATGCCTTTGTTCACCAATTTTCAAGCCTCCACCAGATGCCGTGGCCCAAAAATCTTACCCTTCTGATTTATCACTTCAACTTGCTGATGGTAAAAGAAGCATAAGAGATGTTGAAAATAGTTTGGTATATGCTACACACAAAGAGCTCTTTTATTTTGTCACAAATGTAACCCATGGAAAAAATGGATTAAGTCCATGTAATGATTCAGGCACTTCAAGCTTGGCAGATGAATTAGTTGAAAAGTTTTCTGTTCATCTCAAACACCCTGAGCAGCCACTTCTGCGTGCAAAACCAGTTTTCAATCTGCACAACTTGCTACATAATCGGAAGTATGAGGATACAGAGCCACATGAGCTGGAGGAGTTCTTTGTTGATTTGCCTCCTGAGCTTTGTGAATTGAAAGTAGTAGGCTTTTCGAAGGAGATGGGTAGTTCCATATCTTTGTTACCCTCAGTTATGCATCGGCTGGGAAACTTACTGGTTGCTGTTGAACTGAAGCAAATGCTGTGTAGTTTCTTCCCAGAGGCAGCTGAAATTAATTCCCATACAGTTCTTGAGGCTCTCACAACTGAGAAGTGTCAGGAACGCTTTTCACTTGAAAGACTGGAAGTGCTTGGAGATGCTTTTCTCAAATTTGCTGCTGCACGCCATTTTTTTCTCACATGTGACAGTCTTCATGAAGGTGACCTTACTGCTAGGCGTTCCAATGTTGTAAATAATTCCAATTTGTATAAGTTGGCTCTTAGATGCAATTTGCAGGTCTATATACGTGATCAGGCATTCGATCCCTCTCAATTCTATGCATTTGGCCGTCCTTGCCCAAGAGTTTGTAACAACGAAACGGAAGAAAGTATACACTCATGTTTAAATTCTGTTAAGGAGCAAGGAAGCTCAACTGAAATCCAGTGCAATAAAAATCACCACTGGTTATATAGAAAAACAATTGCCGATGCGGTTGAAGCTTTGGTCGGAGCATTTATTGTTGACAGTGGCTTTAAAGCTGCAATTGCATTTCTTACGTGGCTCGGCATACAAGTTAATTTTGATGCCTCACAATTGATTAGTGTTTGCCGAGGAAGTGTTGGCTATATTCCCCTCTCTGCTGATGTAGACATTCTTTCCCTCGAAGATAAGTTGGGATATCACTTCGTTCATAAGGGTCTGCTTCTTCAGGCATTTGTGCACCCGTCTTACAATAAGCATGGAGGAGGTTGCTACCAGCGACTAGAGTTTCTTGGAGATGCTGTGCTGGATTTTTTGATTACTTCATACCTATACTCAGCTTATCCAAAGCTGAAGCCCGGCCAATTGACAGATTTGAGATCTTTGTCTGTTAACAATAAGGCATTTGCCTGTGTTGCTGTGGATCGCAGTTTTGATAAATTTCTCTTATGCGATTCTAGCAGCCTTTCTGAGGCAGTAAAAAAATACGTGGACTATATTAGAAGGCCTTCATCAAGCAGTAACAATGAAGGGCCGAAATGTCCAAAGGCCTTGGGTGACTTGGTTGAATCTTGTGTTGGTGCTATTCTTCTGGATTCAGGGTTCAATTTGTACAAAGTTTGGGAAATAATGACTTCATTCTTGGACCCAATCATGAAATTCTCATCTAGCTTGCAGCTTAGTCCAAAGAGGGATCTGCAAGAACTCTGCCAATCTCATAATTTGGATTTGCAACTCCAAGCAACGAAATTGACTAAAACATTTTCAGTTGAAGCAAAAGTGACTGTGAATGGTATATGTCAAACAGCTGTGGCGACCAGCCAAAGTATAAAAGAGGCGACTAGGATTGCTTCACAGAAACTATTTTCAGAGCTAAAGGCTCAAGGCTGGAGACAAAGGTCAAAACCTTTGGAAGAAGTTCTAAAATCTACCTTTAAGGGGAAAGCAAAACTTATTGGCTATAATGAAACTCCCATTGATGTAACAGCAATTAATTCCATTGAGCACGTAACAGTTAATGGGGACTTAAGCAGCAACTCAAACCCGATAATTCGCCCCCTCCGCGAGGTGATTGGTATAAAACCTGTTGACCGACAGTTTCAACACTCTTCTATGGGAAAGCATAGCAGAACTTGTGATGGTGATTTATCGAGGACAGATTGTTCATTCAAAGGAACTGCAAGATCACGATTGTATGAATTCTGTGCTGCTTCTTGCTGGAAACCACCAACATTCGAGTGCTGCAATGAAGGGGGACCGGATCACATGAAGTCATTCACTTACAAGGTGACCTTGGACATAGAAGAATCCCCAGATGTGATTTATGAATTCATTGGGGAACCAAAACCGAAGAAGAAAGACGCAGCAGAGTGCGCGGCCGAGGGTGTGTTTTGGTACCTGCAACACGAAGGTTACCTGTCTAAGCGCTTCCGAACTGACTCATAA 4908 0.4118 MPDGESSAVTSSSELELHLSLSDQLLQNLSLSQVKDHDDPAVKKDPKKIARRYQLELCKKALEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPQKNVCVFLAPTVALVHQQAKVIKDSTDFKVGIFCGSSKRLKCHHDWEQEIGQYEVFVMTPDILLHNLSHCFIRMEMISLLIFDECHHAQAKSNHPYAEIMKVFYKNNPKSAPRIFGMTASPVVGKGASSEANLAKSINSLEQILDAKVYSVEDRELESFVTNATISVYHYSSVANGTTSLYTAYYAGLEEIKHQCIATLGRNIEDHQNRMNTKKLLNRIHDNVVFCLRNLGIWGGLQASHILLRGDRSERHELVEAEGNSSDDSVCDKYLSQAAELFNSLLKGDSLSDLSSTEILREPFFSSKLLCLVQILSSFRMHQNPKCIIFVNRIVTARSLSYILKKLKLLTQWRSDFLVGVHAGLKSMSRKTMNIIVEKFRSGELNILVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSDNKKDLDLIEGFEKDECRMNMEIADRTSTETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEFFDPKPNFYYFDEKDGIACHIIFPSNAPIHLIVGSPQLSMEASKKDACLKAIQVLYEKGALSDCLLPKQETAEPDEKDSSPNTDGCEDDNSRGELHQMLVPSIFRKSWINEEENVHLNSYYIKFCPLPEDRVYKKFGLFMMTCLPAEAEKLKLDLHLAHGRSVMTTFVPFGVIEFDKDEIKMAEHFQEMFLKIILDRSEFVSDLVTLTKGAESHSSSSTFYLMLPVNLHEYENIMTVDWKTVRRCLCSPIFKPPPDAVAQKSYPSDLSLQLADGKRSIRDVENSLVYATHKELFYFVTNVTHGKNGLSPCNDSGTSSLADELVEKFSVHLKHPEQPLLRAKPVFNLHNLLHNRKYEDTEPHELEEFFVDLPPELCELKVVGFSKEMGSSISLLPSVMHRLGNLLVAVELKQMLCSFFPEAAEINSHTVLEALTTEKCQERFSLERLEVLGDAFLKFAAARHFFLTCDSLHEGDLTARRSNVVNNSNLYKLALRCNLQVYIRDQAFDPSQFYAFGRPCPRVCNNETEESIHSCLNSVKEQGSSTEIQCNKNHHWLYRKTIADAVEALVGAFIVDSGFKAAIAFLTWLGIQVNFDASQLISVCRGSVGYIPLSADVDILSLEDKLGYHFVHKGLLLQAFVHPSYNKHGGGCYQRLEFLGDAVLDFLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSSLSEAVKKYVDYIRRPSSSSNNEGPKCPKALGDLVESCVGAILLDSGFNLYKVWEIMTSFLDPIMKFSSSLQLSPKRDLQELCQSHNLDLQLQATKLTKTFSVEAKVTVNGICQTAVATSQSIKEATRIASQKLFSELKAQGWRQRSKPLEEVLKSTFKGKAKLIGYNETPIDVTAINSIEHVTVNGDLSSNSNPIIRPLREVIGIKPVDRQFQHSSMGKHSRTCDGDLSRTDCSFKGTARSRLYEFCAASCWKPPTFECCNEGGPDHMKSFTYKVTLDIEESPDVIYEFIGEPKPKKKDAAECAAEGVFWYLQHEGYLSKRFRTDS 1635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211625g00004 1635 CDD RIBOc 1228 1377 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 Pfam Helicase conserved C-terminal domain 397 515 IPR001650 -
Stsc211625g00004 1635 ProSiteProfiles PAZ domain profile. 875 975 IPR003100 GO:0005515
Stsc211625g00004 1635 FunFam Endoribonuclease dicer-like protein 45 282 - -
Stsc211625g00004 1635 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 554 IPR001650 -
Stsc211625g00004 1635 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1548 1622 - -
Stsc211625g00004 1635 Gene3D Ribonuclease III domain 1017 1182 IPR036389 GO:0004525|GO:0006396
Stsc211625g00004 1635 SMART ultradead3 46 251 IPR014001 -
Stsc211625g00004 1635 SUPERFAMILY dsRNA-binding domain-like 1547 1628 - -
Stsc211625g00004 1635 Gene3D - 390 552 IPR027417 -
Stsc211625g00004 1635 PANTHER DICER-RELATED 63 1448 - -
Stsc211625g00004 1635 FunFam Endoribonuclease dicer-like 1 388 551 - -
Stsc211625g00004 1635 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Stsc211625g00004 1635 SMART riboneu5 1022 1191 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 SMART riboneu5 1227 1378 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 CDD DEXHc_dicer 48 247 - -
Stsc211625g00004 1635 SUPERFAMILY RNase III domain-like 1210 1373 IPR036389 GO:0004525|GO:0006396
Stsc211625g00004 1635 CDD DSRM_DCL_plant 1554 1623 - -
Stsc211625g00004 1635 Gene3D Dicer dimerisation domain 577 673 IPR038248 -
Stsc211625g00004 1635 Gene3D - 1554 1623 - -
Stsc211625g00004 1635 Gene3D - 48 276 IPR027417 -
Stsc211625g00004 1635 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 581 671 IPR005034 GO:0016891
Stsc211625g00004 1635 Gene3D paz domain 868 973 - -
Stsc211625g00004 1635 ProSiteProfiles Ribonuclease III family domain profile. 989 1171 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 SMART PAZ_2_a_3 854 1001 IPR003100 GO:0005515
Stsc211625g00004 1635 MobiDBLite consensus disorder prediction 666 688 - -
Stsc211625g00004 1635 SUPERFAMILY dsRNA-binding domain-like 1337 1447 - -
Stsc211625g00004 1635 FunFam Endoribonuclease dicer-like 1 1207 1376 - -
Stsc211625g00004 1635 Pfam Ribonuclease III domain 1247 1355 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 Pfam Ribonuclease III domain 1040 1171 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 ProSiteProfiles Ribonuclease III family domain profile. 1212 1355 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 CDD RIBOc 1025 1182 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 FunFam Endoribonuclease dicer-like 1 576 672 - -
Stsc211625g00004 1635 Pfam DEAD/DEAH box helicase 52 213 IPR011545 GO:0003676|GO:0005524
Stsc211625g00004 1635 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 531 IPR027417 -
Stsc211625g00004 1635 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1547 1623 IPR014720 -
Stsc211625g00004 1635 ProSitePatterns Ribonuclease III family signature. 1247 1255 IPR000999 GO:0004525|GO:0006396
Stsc211625g00004 1635 Pfam PAZ domain 875 996 IPR003100 GO:0005515
Stsc211625g00004 1635 SMART helicmild6 427 517 IPR001650 -
Stsc211625g00004 1635 SMART DRBM_3 1383 1447 IPR014720 -
Stsc211625g00004 1635 SMART DRBM_3 1548 1622 IPR014720 -
Stsc211625g00004 1635 Pfam Dicer dimerisation domain 581 666 - -
Stsc211625g00004 1635 Gene3D Ribonuclease III domain 1210 1445 IPR036389 GO:0004525|GO:0006396
Stsc211625g00004 1635 SUPERFAMILY RNase III domain-like 1020 1186 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211625g00004 Stsc-Chr211625 10550 21800 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211625g00004 415 552 Eukaryotic Initiation Factors Gene Family AT3G19760 31.915 2.44e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211625g00004 K11592 - gmx:100818702 2458.33