Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc211625g00003 | ATGTCGGGTTGGGACGAAGGAGGCGTCTACTACAGCGACCAAGCTCACTCATGGCACGACGGCAACCGTCCCGGAGATCCCGACTCCACCGCGTCGAACCACACTATCCAACAGAAATTCAAGGAGTTCATCCGCAACTTCAGTAAGAATGGTCTCTTCCCTTACAGACAAAACCTCCTTGATAACCCTAAGTTCCTCCTTGTTAGATTGGAAGACCTCGACGAATTCGCTCCCGAACTCTCCCCTAAGCTTGAGTCTTCCCCCTCCGATTTCTTGCCTTTGTTCGAAAGCGCCGCTGCGCAGGTTGTGGGGAGTTTGAAGACGAAGGTCACTGGGGACACCGGAGAGCTGGAAGATCAGGTTGCCGGCGATGTTCAGATTCTGCTTACTTCCGAGAAGGATCCTGTATCCATGAGGTTGCTCGGGGCACAAAACATATCAAAGCTTGTTAAAATTGCTGGGATTACTATTGCCGCATCGAGGACTAAGGCCAAGGCAACTTATGTTACCTTAGTATGTAAGAACTGCAAGAAAGGGAAGGAAATTCCGTGCAGGCCAGGACTTGGGGGAGCAGTTGTTCCTCGATCATGTGATCATACCCCTCAGCCTGGAGAAGAACCATGCCCAATTGACCCATGGATTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAACAAACATTGAAACTGCAAGAGAACCCAGAGGATGTTCCAACCGGTGAGCTACCTAGAAACCTGCTCCTCTCCGTTGATCGTCATCTAGTTCAAACAGTAGTACCTGGCTCAAGATTGACAGTGACTGGAATCTTCAGTATTTTCCAAGCGTCGAACTCTGCATCGGTTGTTGGAATAGAAGACACAAATGAAGCCAAGTCTGGTGGTCCTTCTGCATTTACACCAGAAGAGATCGAAGAATTCAAAAAGTTTGCAGCTGAACCTGATGCATATAAAAATATATGCTCCAAGATTGCTCCCTCGATATTTGGGCATGATGACGTCAAGAAGGCTGTGGCCTGTCTTCTTTTTGGTGGGTCAAGAAAGAATTTACCAGATGGAGTGAAGTTAAGAGGTGATATCAATGTGTTGCTTCTTGGGGATCCATCTACAGCAAAATCACAGTTTCTGAAGTTTGTTGAGAAGACAGCTCCTATTGCTGTCTATACTTCCGGGAAAGGCTCATCAGCTGCTGGTCTCACAGCTTCTGTAATCAGAGATACGAGCACTCGTGAGTTTTACCTTGAAGGAGGGGCTATGGTCTTGGCAGATGGAGGCGTTGTCTGCATTGACGAATTCGACAAGATGAGACCAGAAGATAGGGTTGCCATCCATGAAGCCATGGAACAACAAACTATATCCATAGCCAAAGCAGGAATAACTACAGTTCTTAATTCTAGGGCTTCCGTTCTTGCTGCTGCTAATCCTCCATCGGGACGTTATGATGATCTTAAGACTGCACAGGATAACATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTTATCGTGAAAGACATCAGAATGTACAGTCAAGACAAGATCATAGCTAGCCATGTCATAAAGGTTCATGCATCAGCTGGTGCAACCGCTAGTGAGAACAGGGTTTCTAAAGAAGAAAATTGGCTGAAGAGGTAA | 1641 | 0.4631 | MSGWDEGGVYYSDQAHSWHDGNRPGDPDSTASNHTIQQKFKEFIRNFSKNGLFPYRQNLLDNPKFLLVRLEDLDEFAPELSPKLESSPSDFLPLFESAAAQVVGSLKTKVTGDTGELEDQVAGDVQILLTSEKDPVSMRLLGAQNISKLVKIAGITIAASRTKAKATYVTLVCKNCKKGKEIPCRPGLGGAVVPRSCDHTPQPGEEPCPIDPWIVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTVTGIFSIFQASNSASVVGIEDTNEAKSGGPSAFTPEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDTSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRASVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHVIKVHASAGATASENRVSKEENWLKR | 546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc211625g00003 | 546 | Pfam | MCM OB domain | 138 | 273 | IPR033762 | - | |
| Stsc211625g00003 | 546 | Gene3D | - | 296 | 546 | IPR027417 | - | |
| Stsc211625g00003 | 546 | ProSiteProfiles | MCM family domain profile. | 315 | 521 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | SUPERFAMILY | Nucleic acid-binding proteins | 39 | 275 | IPR012340 | - | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 468 | 480 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 416 | 430 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 495 | 503 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 444 | 457 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 356 | 371 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | ProSitePatterns | MCM family signature. | 424 | 432 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Stsc211625g00003 | 546 | Gene3D | - | 31 | 121 | - | - | |
| Stsc211625g00003 | 546 | SMART | mcm | 134 | 545 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | Pfam | MCM P-loop domain | 303 | 525 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | FunFam | DNA helicase | 165 | 223 | - | - | |
| Stsc211625g00003 | 546 | Pfam | MCM N-terminal domain | 37 | 119 | IPR027925 | - | |
| Stsc211625g00003 | 546 | Gene3D | - | 165 | 223 | - | - | |
| Stsc211625g00003 | 546 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 30 | 528 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Stsc211625g00003 | 546 | FunFam | DNA helicase | 31 | 118 | - | - | |
| Stsc211625g00003 | 546 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 325 | 525 | IPR027417 | - | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 139 | 154 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc211625g00003 | 546 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 165 | 177 | IPR008048 | GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Stsc211625g00003 | 546 | Gene3D | - | 138 | 273 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc211625g00003 | Stsc-Chr211625 | 4764 | 8059 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc211625g00003 | 1 | 546 | Core DNA Replication Machinery Family | AT2G07690 | 75.579 | 0.0 | 861 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc211625g00003 | K02209 | - | qsa:O6P43_003024 | 905.205 |