Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211624g00005 ATGGTTGGACCAAACTTCATGGACGAGCTAGACTGCGGTAACTTCTTCGACCACATCGATGACCTCCTCGACTTCCCCGTCGAAGACGTCGACGGTGCCGGTGCCGCCGCATTTCCCGCCGCCGGAAACTGCAACTCGCTCGCCAGTATATGGCCTCCGGAGACCGACTCGTTCCCCGGCTCCGACTCGGTGTTTTCCCGCAACAGCGCTTCAGACCTCTCGGCGGAGCTTTCGGTTCCGTATGAGGACATTGTCCAATTGGAATGGTTGTCCAACTTTGTGGAGGACTCTTTCTCCGGTGGGAGCCTCACCATGAAGAAGGTGGAGCAGCCATCCTGCACCACCAAGGATGACTCAGCGCACAACCAATTTCAGACATCCAGCCCGGTTTCTGTCCTTGAGAGCAGCAGCTCGTGCTCCGGCAGCAAGGTGCCGCCTCGCAGCCCGGAGGTTTACATCCCCGTGCCATGCGGCCGTGCACGCAGCAAGCGTCCACGCCCGGCGACATTCAATCCTCGTCCGGCCATGCAGCTCATCTCCCCTGCCTCCTCTTTTGTTGGGGAAAACATGCAGCCTAATGGCATCTCGGCCGCCAAGGCCTACTCGGATTCCGAGAATGTTGCCGAGTCTCAACCGGTAATCAAGATGCCGAAACAAGTTTCCGGGGAGCCCAAGAAGAAGAAGAAAATCAAGCTGACGCCTCCATCACTAGGAGGTCAAGCTGATGATTCAAACCAGAATGCTTCACAGCCAGTTAGGAAATGCATGCATTGTGAGATCACCAAGACACCTCAGTGGAGGGCAGGGCCGATGGGGCCAAAAACACTCTGCAATGCATGCGGCGTTCGCTACAAGTCTGGCCGGCTTTTCCCCGAGTACCGGCCGGCCGCAAGTCCAACATTCTGCCCATCGTTGCACTCCAATTCCCACAAGAAGGTCATTGAAATGAGATCCAAGGTTATTGAAAAATCTGATTTTGCAAATCATGCAGATGCCTCACCAGAACTCATTCCAAACACTAACAGCAGCCTTACCCTGGAGTACATGTGA 1050 0.5543 MVGPNFMDELDCGNFFDHIDDLLDFPVEDVDGAGAAAFPAAGNCNSLASIWPPETDSFPGSDSVFSRNSASDLSAELSVPYEDIVQLEWLSNFVEDSFSGGSLTMKKVEQPSCTTKDDSAHNQFQTSSPVSVLESSSSCSGSKVPPRSPEVYIPVPCGRARSKRPRPATFNPRPAMQLISPASSFVGENMQPNGISAAKAYSDSENVAESQPVIKMPKQVSGEPKKKKKIKLTPPSLGGQADDSNQNASQPVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVIEMRSKVIEKSDFANHADASPELIPNTNSSLTLEYM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211624g00005 349 SMART GATA_3 249 299 IPR000679 GO:0006355|GO:0043565
Stsc211624g00005 349 ProSitePatterns GATA-type zinc finger domain. 255 280 IPR000679 GO:0006355|GO:0043565
Stsc211624g00005 349 PANTHER GATA TRANSCRIPTION FACTOR 16 324 - -
Stsc211624g00005 349 Gene3D - 245 325 IPR013088 GO:0006355|GO:0008270
Stsc211624g00005 349 MobiDBLite consensus disorder prediction 208 251 - -
Stsc211624g00005 349 MobiDBLite consensus disorder prediction 113 144 - -
Stsc211624g00005 349 PIRSF Txn_fac_GATA_plant 3 343 IPR016679 GO:0003677|GO:0005634|GO:0045893
Stsc211624g00005 349 FunFam GATA transcription factor 244 331 - -
Stsc211624g00005 349 Pfam GATA zinc finger 255 288 IPR000679 GO:0006355|GO:0043565
Stsc211624g00005 349 ProSiteProfiles GATA-type zinc finger domain profile. 249 285 IPR000679 GO:0006355|GO:0043565
Stsc211624g00005 349 MobiDBLite consensus disorder prediction 155 174 - -
Stsc211624g00005 349 CDD ZnF_GATA 254 301 IPR000679 GO:0006355|GO:0043565
Stsc211624g00005 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 253 312 - -
Stsc211624g00005 349 MobiDBLite consensus disorder prediction 113 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211624g00005 Stsc-Chr211624 59792 63121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211624g00005 10 325 C2C2-Gata Transcription Factor Family AT1G08010 37.025 1.64e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Stsc211624g00005 GATA 6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211624g00005 - - gmx:100815693 546.969