Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211624g00004 ATGTTTATGTCCATGGATTCTTGTTCTTCCTCCTCCATCGACAGAACCAGATCCACAAGAACCTCACCATCCACATCACCACCACAAACCTCCTTAGACTCTCAACTCTGGCATGCCTGCGCAGGCGCCATGGTTCAAATGCCGCCCCTCAACTCCAAAGTCTTCTACTTCCCACAGGGCCACGCTGAACACGCCCATGCCCATTCCCATGGACAAAATTCCCATTTTGCCCCTACCTTCAAAACCCCAATCCCTCCCTTCTTCCCTTGCAGAGTCACCGCCATCAAATACATGGCGGAACCTGAAACCGACGAGGTCTACGTCAAGATCACACTCACCCCTCTCACTCAACACCACCACCTTGCATCAGACCTAGAAGAACGCGATGATCATTCTAGTAATAATCCTTTCTTGGACAATAATAATCTTGAAAAGCCTGCTTCTTTTGCCAAGACTCTAACACAGTCCGATGCCAACAATGGCGGCGGCTTCTCCGTGCCTCGTTACTGCGCCGAAACGATCTTCCCGAGGCTTGATTACTCGGCGGAGCCACCGGTTCAGACGATAATCGCAAAAGACGTGCATGGACAGTGTTGGAAGTTCAGACACATTTATCGAGGGACACCAAGGAGGCACCTTTTGACTACTGGTTGGAGCAATTTCGTTAACCAGAAGAAGCTTGTTGCCGGTGACTCCATTGTTTTTCTCAGAGCCGAAAACGGTGACCTTTGTGTTGGGATTAGGAGGGCCAAGAAGGGTGGTATTGGCGCTGGAAATGGAACCTTCACTTCTACTACTGCTGAGTTTTGGAACAATAGTAATGTTTCTCCGCCGCGAAGTTTTGGCTATGGTGGTGGTGGTGGTGGTGGTGAGTCTTGTGTTGTTGAGGCTGTGAATTGTGCTATGAATGGAAGGGCATTTGAGGTAGTGTATTATCCAAGAGGGAGCTCGCCGGAGTTTTGTGTGAAGGCTTCTTCTGTGAGGGCTGCAATGCAGGTTCAATGGTGTTCTGGCATGAGATTCAAGATGCCCTTTGAGACTGAGGATTCTTCAAGGATCAGTTGGTTCATGGGCACCATTTCTTCTGTCCAGGTTTCAGATCCTCTCACTTGGCCTGATTCTCCTTGGCGCCTTCTTCAGGTGGTGTGGGATGAACCAGATCTACTCCAAAATGTGAAGTGTGTGAACCCATGGTTAGTTGAACTAGTTTCAAATGTGCCAAACTTCCATCTATCTCCATTCGCACAGCCAGCAAGGAAGAAACAAAGGTTCCTGCAAGACCAACCAGATTTCCATCTCATCAACCAAATTCCAATTCCACCATCATCATTCCAAGACCATCACAGTTTTTCTGCAGGCATACAGGGAGCCAGGCATGCCCATCATCAATTTGGGCTCGCTCCGCATGAATTCCACATCAACACCCTTCATCATCAACCAGACATGAACCTTCTTGGTGGATTTCCAAGGCTTGATCATGCAGCACAGCAACCTACTAGGCCTAGTTTTGGAATCTACAACAACACTGCTGCCACCAAGAACAAGAATAATAACAACAATCTTGAGATATCTTGCTTGTTGAGTGTGGGAAATCCTGGCCATAAGGAAGAAGAATCTTGTTCCAATGAGACAAAAGCACCTCACATTTTGTTGTTTGGGAAGCTCATTCACACTGAGCAGAACAACTCGTCAAACAGTGCTTCTGAAGGAACTAATTCATCACCCAAGACATCAGTTGAAAACTCTTCTGATGTAGGGTCTCCGTGGTACAAAGATCAGCGCAAGAATAATGACCTTGTGGGAGCCGAAAACATTAACATATTGTGTATGGCCTTATAA 1839 0.4731 MFMSMDSCSSSSIDRTRSTRTSPSTSPPQTSLDSQLWHACAGAMVQMPPLNSKVFYFPQGHAEHAHAHSHGQNSHFAPTFKTPIPPFFPCRVTAIKYMAEPETDEVYVKITLTPLTQHHHLASDLEERDDHSSNNPFLDNNNLEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGAGNGTFTSTTAEFWNNSNVSPPRSFGYGGGGGGGESCVVEAVNCAMNGRAFEVVYYPRGSSPEFCVKASSVRAAMQVQWCSGMRFKMPFETEDSSRISWFMGTISSVQVSDPLTWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNVPNFHLSPFAQPARKKQRFLQDQPDFHLINQIPIPPSSFQDHHSFSAGIQGARHAHHQFGLAPHEFHINTLHHQPDMNLLGGFPRLDHAAQQPTRPSFGIYNNTAATKNKNNNNNLEISCLLSVGNPGHKEEESCSNETKAPHILLFGKLIHTEQNNSSNSASEGTNSSPKTSVENSSDVGSPWYKDQRKNNDLVGAENINILCMAL 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211624g00004 612 Gene3D - 147 251 IPR015300 -
Stsc211624g00004 612 FunFam Auxin response factor 335 408 - -
Stsc211624g00004 612 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Stsc211624g00004 612 MobiDBLite consensus disorder prediction 561 590 - -
Stsc211624g00004 612 SUPERFAMILY DNA-binding pseudobarrel domain 145 276 IPR015300 -
Stsc211624g00004 612 CDD B3_DNA 148 249 IPR003340 GO:0003677
Stsc211624g00004 612 Pfam Auxin response factor 297 380 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc211624g00004 612 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Stsc211624g00004 612 FunFam Auxin response factor 147 251 - -
Stsc211624g00004 612 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 31 583 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc211624g00004 612 MobiDBLite consensus disorder prediction 561 594 - -
Stsc211624g00004 612 Gene3D - 334 408 - -
Stsc211624g00004 612 MobiDBLite consensus disorder prediction 1 33 - -
Stsc211624g00004 612 SMART B3_2 149 251 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211624g00004 Stsc-Chr211624 30877 33613 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211624g00004 23 603 B3 DNA Binding Superfamily AT4G30080 52.013 0.0 548
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc211624g00004 B3 1.6e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211624g00004 - - adu:107467916 862.833