Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211623g00020 ATGAGTCAACTGGGTGTGATGCTGCAGGAGTCCTTGCGAGCTGAGACGGAAGCAAGGACCATTCTGGGTCTGTTAAGGGACCAGATGGAGGGTGTTGTCACCCACACAGGACAACGCAGAAGGAGAACTCTCAAAGACCGCTTCAGATTCAACGGAATGGGTTGCTGCGGTGCCACCTGGGTTTTCCGTCCCTCTCCCCTAACCCTCACTCACGCTGCTCAACAAGAAGAAACGGCTACGGCTGGGAGTGGAGCTGGAGGAGCAGCATCGCCTCCGCAAGAACCGGGTCCGGGTCAAGATTCGAACCCGGATGGACCCGAATGCGAACGGCCCTCTACGGGGATGAATCTGGCGGCGGCATTGGCGGCGGAGCGTGAGTTGCGGAGTTCGCAGGAGGAAGGGGAGAGGGAGGTCGGGGGATCGGAGACGCCGTGGAGGGTGTCGCTGATGCGGCTGCTAGAGGAAACAGAAGGAGGAGGAGGAGGAGGAGGGGAAAGGGGTGGGGAGAGTGAAGGGGGTGATTGGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCGTTCATACCATGTGGCCACACGTTCTGCAGAGTGTGCTGTAGAGAGGTCTGGTTGAACCGGGGCACCTGCCCACTTTGTAACCGTTCCATTCTCGAGATTCTCGATATCTTCTGA 678 0.59 MSQLGVMLQESLRAETEARTILGLLRDQMEGVVTHTGQRRRRTLKDRFRFNGMGCCGATWVFRPSPLTLTHAAQQEETATAGSGAGGAASPPQEPGPGQDSNPDGPECERPSTGMNLAAALAAERELRSSQEEGEREVGGSETPWRVSLMRLLEETEGGGGGGGERGGESEGGDWVCCVCMGRKKGAAFIPCGHTFCRVCCREVWLNRGTCPLCNRSILEILDIF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211623g00020 225 MobiDBLite consensus disorder prediction 77 146 - -
Stsc211623g00020 225 SMART ring_2 177 214 IPR001841 -
Stsc211623g00020 225 MobiDBLite consensus disorder prediction 126 140 - -
Stsc211623g00020 225 PANTHER OS01G0917900 PROTEIN 5 225 - -
Stsc211623g00020 225 ProSiteProfiles Zinc finger RING-type profile. 177 215 IPR001841 -
Stsc211623g00020 225 CDD RING-HC 177 214 - -
Stsc211623g00020 225 SUPERFAMILY RING/U-box 172 222 - -
Stsc211623g00020 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 224 IPR013083 -
Stsc211623g00020 225 Pfam Zinc finger, C3HC4 type (RING finger) 176 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211623g00020 Stsc-Chr211623 76994 77671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211623g00020 21 225 C3H Transcription Factor Family AT4G22250 48.837 1.53e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211623g00020 - - gmx:106799504 258.07