Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211623g00017 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTGGTTCAAACACAAACTCAAACTCAAATTCAAACCAAGCCTCTGTTGATAGTTCAACGGCACCACCACCACCACCACCAGTAGCTAATGGAGGAGTGGAGTTGGATTCTTCAATTTTTTTGAAGAGAGCCCATGAGCTCAAAGAGGAAGGGAATAGGAGATTTCAGAATAAAGACTATGCTGGCGCCCTTGAGCAGTATGATAATGCTCTTAGACTCACCCCAAAATCCCACCCAGACAGAGCCGTTTTCCATAGCAACAGAGCAGCTTGTTTGATGCAGATGAAGCCCATTGATTATGAAACTGTTATTGCTGAGTGCACCATGGCCCTTCAGGTCCAGCCTCGATTCGTCCGGGCACTCCTTCGAAGGGCCCGGGCTTTTGAGGCTGTAGGCAAGTATGAAATGGCTGTGCAAGATGTGCAGACCTTACTGGGTGCTGACCCCAATCACAGGGATGCTTTGGAAATCGCTCAGAGGTTGAAGACTGCATTGGGGCCTCGTCAGGAGGCCCAGCAGGACCTCCACAGTCGCCCCTCCCCTGCTGCTCTTGGTGCTTCTGCTGTCCGTGGTGCTCCTATAGCTGGTCTAGGGCCATGTTTACCTGCTCGACCAGTGCAAAAGAAGGGGGCAAATTCAGCAGGTGCATCGGTTGTGTCGCCTAACAACAAGCTAGATCGGTCACAAGCTGTTTCACCAGCTGAAAATGGTCCTGATGCCAAGTCCCAGTTTCCAAAAGTTGTGTTGAAGTCTTCGAATGGTTCTGCAAAGCTGGCTCACATGAAAAATGATAACCAAAAGGAATACTCATCTCATTTGTCCTCTAATCATGGACAACGTTCGGAGGTCACAGTTCGGTGGAGACCATTGAAGCTTGTTTATGACCATGACATTAGGCTTTCCCAGATGCCAGTGAATTGCAATTTTAGGGTTCTGAGAGATATAGTGAGCAAAAGGTTTCCTTCATCAAATTCTGTTCTGATCAAGTACAAGGATAATGATGGTGATCTGGTGACTATAACCTCTACTGATGAACTCAGGTTGGCAGAGTCTAGTGCTGATAGCCATCTTCTAAAAGAACCTGAAGCAGATAAAAGTGATTCCGTCAGTATGCTGAGACTACATATAGTTGAAGTTAGTCCTGAGCAAGAGCCTATGCTGCTGGAAGAAGAGGAAGAGAAACCTATTGAGAGTGAGGAGATCAAGGTAGATGAGAGTGGGTCTCATTCATCTCCCAGTGAATCTGTCCATGAAGTTGCTGATTCTGAGATTGATAAGACAGTGAAGGAGGCTCCAAAAGAAAAATCAGGAACCACAGGAGATGCTGAAAGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAATTTGCTCAACTTTTCCGCTCGCATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGAATGGAACTCTGTTCAGAGGCACTTGAGGAAACAGTAACCAGTGAAGAGGCCCAGGAACTGTTTGACAAGGCTGCTTCAAAGTTCCAGGAGGTGGCCGCATTGGCATTCTTCAACTGGGGAAATGTTCACATGTGTGCAGCTAGAAAGCGGATCCCATTAGATGAATCTGCCGGGAAGGACGTGGTAGCAGAACAGCTTCAAGTGGCTTATGACTGGGTCAAGGAGAAGTATTCCTTGGCGAGAGATAAGTACGAGGAAGCACTCGTGATCAAACCAGACTTCTATGAGGGACTTTTGGCTCTTGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCATTTGCCCTTGCTAAGAAGATAGATCTATCAGGCTGGGATCCAACAGAGACGCTTGAACTTTTCGACAATGATTTGTTGAGAAGAAGAAAGAAACAAGGCGGAGGAGGGGCTGCTGAAGCTGAGGCCTCTGGGGTTGGTGGTCAGGGTGATATATCACCGGAAGAAGCTGCTGAGCAAGCAGCCGTCATGAGATCCCAGATTCACCTCTTCTGGGGTAATATGCTTTTTGAGAGATCCCAAGTTGAATGCAAATTAGATATGAGTGGTTGGAAGGAAAAGCTGGAAGCTGCCACTGAACGCTTTAAGCTTGCTGGAGCTTCTGAAGCGGACATTGCAACAGTTCTTAAGAATCACTGCTCAAATGGTGATGCAAAAGAAGGAGATGATAAAAAGATTGACAACCCGCAACCCAGTAAGACTTCTGTAGTAGAGAACAATAAATGA 2253 0.466 MGKSGGRRKKGGGSNTNSNSNSNQASVDSSTAPPPPPPVANGGVELDSSIFLKRAHELKEEGNRRFQNKDYAGALEQYDNALRLTPKSHPDRAVFHSNRAACLMQMKPIDYETVIAECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQTLLGADPNHRDALEIAQRLKTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVQKKGANSAGASVVSPNNKLDRSQAVSPAENGPDAKSQFPKVVLKSSNGSAKLAHMKNDNQKEYSSHLSSNHGQRSEVTVRWRPLKLVYDHDIRLSQMPVNCNFRVLRDIVSKRFPSSNSVLIKYKDNDGDLVTITSTDELRLAESSADSHLLKEPEADKSDSVSMLRLHIVEVSPEQEPMLLEEEEEKPIESEEIKVDESGSHSSPSESVHEVADSEIDKTVKEAPKEKSGTTGDAESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQELFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLARDKYEEALVIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDPTETLELFDNDLLRRRKKQGGGGAAEAEASGVGGQGDISPEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLDMSGWKEKLEAATERFKLAGASEADIATVLKNHCSNGDAKEGDDKKIDNPQPSKTSVVENNK 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211623g00017 750 ProSiteProfiles PB1 domain profile. 298 390 IPR000270 GO:0005515
Stsc211623g00017 750 SMART tpr_5 55 88 IPR019734 GO:0005515
Stsc211623g00017 750 SMART tpr_5 129 162 IPR019734 GO:0005515
Stsc211623g00017 750 SMART tpr_5 93 128 IPR019734 GO:0005515
Stsc211623g00017 750 Gene3D - 300 370 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 393 455 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 395 409 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 217 255 - -
Stsc211623g00017 750 SUPERFAMILY TPR-like 52 186 IPR011990 GO:0005515
Stsc211623g00017 750 ProSiteProfiles TPR repeat profile. 55 88 IPR019734 GO:0005515
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 1 44 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 10 29 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 635 661 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 427 455 - -
Stsc211623g00017 750 CDD PB1 301 370 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 722 750 - -
Stsc211623g00017 750 PANTHER PROTEIN CLMP1 1 743 IPR044517 -
Stsc211623g00017 750 Pfam PB1 domain 298 389 IPR000270 GO:0005515
Stsc211623g00017 750 SUPERFAMILY CAD & PB1 domains 296 368 - -
Stsc211623g00017 750 SUPERFAMILY TPR-like 477 600 IPR011990 GO:0005515
Stsc211623g00017 750 Gene3D Tetratricopeptide repeat domain 51 176 IPR011990 GO:0005515
Stsc211623g00017 750 ProSiteProfiles TPR repeat profile. 129 162 IPR019734 GO:0005515
Stsc211623g00017 750 SMART PB1_new 298 390 IPR000270 GO:0005515
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 724 738 - -
Stsc211623g00017 750 MobiDBLite consensus disorder prediction 224 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211623g00017 Stsc-Chr211623 61154 63526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211623g00017 52 176 Calmodulin-binding Proteins AT3G25230 28.676 3.45e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211623g00017 K26538 - gmx:100786963 1123.23