Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211623g00001 ATGTCTTTCTTCCGGGGCAGAGTCTTCCACGGTGGCCCCACCACCGATCACCACCTTCCATCAAAACGCAAACTTGAAGACTCCGGTCCCCTCACCGATGATAGCAACGACCTAATGAGCGACTTAGTGTCGGTCAGAATGAGGAAAGACGAAGGAGGAGGAGCCGTGAATTCATGGTCCCCAATCAGAACCCCTCTAAGCCCTCTTTCCGAACCCGAACCCCAATCCCAATCCCAATGGGGTTTATTAATCCGGCCTCACTTGCAGTTCTTCGTTCGGATGATGTCGGAGGGCAACACCATGGTGATGCACGCTTTCCCTGAAGACAGCGTGAAATCCATCCACGAGCGAATTCAGAACATGAAGGGTATTCCCGTTCATGAACAGAGACTGATCTACATGGGAAAGCAGCTTCAATGCGAGAAGACTCTTGCTGAGTGTTCCATCCAAAACGACGCCAGCCTCCAGTTAGTTGGTCGTATGCGCAGCACGGAGCACCCTCATGCCTGGCAGGTCATGAACGACATGACTTCTGTTGTGTATCGAATGTGCAGAGGGGAATCTCTCTCTGATTCCCTCAAGACTGTAAAAGGCCTCATTGACAGTTACCTCAACATGACCCCTAGAGACTCTGACTCTGCTTTTGGCTACTTCCAGATTTTCATGTCTTGTTCTGCACCCTCTATCTTGGTCATGCTCTACCTCTCTCCCTTTTCAGATATATTCCCGTTCGTCCGTGAGCTAGCCAATAGCTTGTTGAGTGATTTGGATTTGAGTATGGAATCCCCAGCCTATGCTGGGCCATTGTACAGCGACGTTAGAGATCTCAGGGCATTCTTGGTCCCTTTGAGATCTGGAATCAGTGTGCAACAATCAATCACAGGTTCTGCAACGGGTGAGGAGCGCCACACCGATGCTGTTCTCACAGAAGAGATTGAATACCTTCATTTTTTATACATTGAGTTGCTGAGCAAGATGGATGAATGCCTTCAGAAAATGGATAGTAGCTTAGCAGACCAGGAGATAACAGAATGGGATACTCGATATAATGCGTGGTCTCAGTATCTTTCTATTTTGAAGGAATTGTATCAAATCTCTAAGCTTTATGACGGTGCAGAAGAGGAACTTTGGAATGTTTTAACGCGCCAAAGAAGTGCAGTGTGTCTACTGATTGTTAGGTATGCAAAGAGGAATGATGAACATCATTGGATCCTTGAACGCAAGTGCGTGACGAACTTTGAATCGAGAAGGCATTTGGCGCTGCTAATGCTGCCGGAGGTAAAAGATGACTATGAGGAGTTGCATGAGATGCTCATTGATAGGTCTCAGTTATTGGCTGAATCTTTCCAGTACATAGGACGTGTGGAACCAGAATCTCTACATGGGGGCCTATTTATGGAATTCAAAAATGAGGAAGCTACTGGGCCAGGTGTACTTAGGGAGTGGTTTCTTTTGGTTTGTCAAGAAATATTCAATCCGCAAAATGCTCTTTTTGTCGCATGCCCAAATGACAAACGAAGATTTTTCCCCAATCCTGCATCCAAAGTAGATCCTCTGCACCTTGATTACTTCCGCTTCTCTGGTCGAATTATTGCATTGGCTTTGATGCATGGGGTGCATGTTGGTATAGTTTTTGATCGTGTGTTTTTCCAGCAATTAGCCGGAAATGAAATTACTTTAGAAGATATAAAGGATGCAGATCCACACTTGTATAGTAGCTACAAGCAAATATTGGAGATGGATCCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAAGAGTTAGGACACAGGGAAGTGGTTGAGCTGTGCCCCGGTGGGAAGAACCTCGCTGTAAATAGTAAGAACAGGGAGAATTATGTTGACCTTCTTATACAGGATCATTTTGTAACATCTATATCTGAGCAGGTGTCACAATTTGCCAAAGGCTTTGGTGATATTCTCTCAAGCTCAAGCCTTGAGTCATCATTCTTTCAAAGTTTAGACCTTAAAGATCTTGACTGGATGCTGCATGGGAGTGAAGATATCATTTCTGTTAAGGACTGGAAAGCACATACTGAGTATCAAGGCTATCAAGAGACAGATCCTCAGATATCTTGGTTTTGGGAGGTTCTTGGGAGAATGACGGATGAACAGAGGAGGGTACTTCTGTACTTCTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTTCGTGGTTTGGCTTCGAGTCTCTCCATTTACAGGTCCCCTGAACATGATGATCACCTTCCGTCATCTCACACATGCTTTTACCGGCTGTGTCTACCAGCCTATTCCACGATAGCCATTATGCAAGATCGTCTTAGAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2391 0.4529 MSFFRGRVFHGGPTTDHHLPSKRKLEDSGPLTDDSNDLMSDLVSVRMRKDEGGGAVNSWSPIRTPLSPLSEPEPQSQSQWGLLIRPHLQFFVRMMSEGNTMVMHAFPEDSVKSIHERIQNMKGIPVHEQRLIYMGKQLQCEKTLAECSIQNDASLQLVGRMRSTEHPHAWQVMNDMTSVVYRMCRGESLSDSLKTVKGLIDSYLNMTPRDSDSAFGYFQIFMSCSAPSILVMLYLSPFSDIFPFVRELANSLLSDLDLSMESPAYAGPLYSDVRDLRAFLVPLRSGISVQQSITGSATGEERHTDAVLTEEIEYLHFLYIELLSKMDECLQKMDSSLADQEITEWDTRYNAWSQYLSILKELYQISKLYDGAEEELWNVLTRQRSAVCLLIVRYAKRNDEHHWILERKCVTNFESRRHLALLMLPEVKDDYEELHEMLIDRSQLLAESFQYIGRVEPESLHGGLFMEFKNEEATGPGVLREWFLLVCQEIFNPQNALFVACPNDKRRFFPNPASKVDPLHLDYFRFSGRIIALALMHGVHVGIVFDRVFFQQLAGNEITLEDIKDADPHLYSSYKQILEMDPDFIDSDALGLTFVREVEELGHREVVELCPGGKNLAVNSKNRENYVDLLIQDHFVTSISEQVSQFAKGFGDILSSSSLESSFFQSLDLKDLDWMLHGSEDIISVKDWKAHTEYQGYQETDPQISWFWEVLGRMTDEQRRVLLYFWTSVKYLPVEGFRGLASSLSIYRSPEHDDHLPSSHTCFYRLCLPAYSTIAIMQDRLRVITQEHIGCSFGTW 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211623g00001 796 Gene3D Hect, E3 ligase catalytic domain 679 795 - -
Stsc211623g00001 796 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 275 794 - -
Stsc211623g00001 796 Pfam Ubiquitin family 91 162 IPR000626 GO:0005515
Stsc211623g00001 796 SMART hect_3 454 794 IPR000569 GO:0004842
Stsc211623g00001 796 ProSiteProfiles HECT domain profile. 456 796 IPR000569 GO:0004842
Stsc211623g00001 796 MobiDBLite consensus disorder prediction 12 37 - -
Stsc211623g00001 796 FunFam E3 ubiquitin-protein ligase UPL5 680 795 - -
Stsc211623g00001 796 PRINTS Ubiquitin signature 120 140 IPR019956 -
Stsc211623g00001 796 PRINTS Ubiquitin signature 141 162 IPR019956 -
Stsc211623g00001 796 PRINTS Ubiquitin signature 99 119 IPR019956 -
Stsc211623g00001 796 Gene3D - 85 179 - -
Stsc211623g00001 796 CDD HECTc 435 794 IPR000569 GO:0004842
Stsc211623g00001 796 MobiDBLite consensus disorder prediction 16 31 - -
Stsc211623g00001 796 MobiDBLite consensus disorder prediction 51 77 - -
Stsc211623g00001 796 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 556 638 - -
Stsc211623g00001 796 Pfam HECT-domain (ubiquitin-transferase) 485 788 IPR000569 GO:0004842
Stsc211623g00001 796 ProSiteProfiles Ubiquitin domain profile. 88 164 IPR000626 GO:0005515
Stsc211623g00001 796 SMART ubq_7 88 160 IPR000626 GO:0005515
Stsc211623g00001 796 MobiDBLite consensus disorder prediction 60 77 - -
Stsc211623g00001 796 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 83 176 - -
Stsc211623g00001 796 Gene3D Hect, E3 ligase catalytic domains 438 666 - -
Stsc211623g00001 796 SUPERFAMILY Ubiquitin-like 89 177 IPR029071 -
Stsc211623g00001 796 Gene3D Hect, E3 ligase catalytic domain 556 638 - -
Stsc211623g00001 796 SUPERFAMILY Hect, E3 ligase catalytic domain 433 782 IPR035983 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211623g00001 Stsc-Chr211623 1171 5262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211623g00001 88 162 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.667 8.99e-13 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211623g00001 - - qsu:112037393 900.197