Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211622g00017 ATGCATGCTATTTCTTCTCCTCCTCCATCGTCACCATCATCTTCTTCTTCCAATTCTATTTGGGTGTTGTCTAGCATAAAGCTTCAATTCTTTGCAAGAATCCGAAGGTTTCTCCAATCAAAAGCGACACGAAAGCGCCGGAGCCAATCAAGAAACAGAGCCGATGAGCAGAACAATAACAAGATTGAAAGCGATGAGACGGTTCGGGTTATGGAGAAGCATGGGGATGATGAGAAGGAAGAAGAGGAGGAGGACTCTGCTATGATATTGCAGAGGACAGTGAAGAAGCTTCACTTTGGAAGCTGGGAAGAGAAGGAGATGGCAGCCATGGATATTGAAAAGTTGGCAAAAGAAGATTTGAAGGTGAGGAAGTTGATAACAGAACTCGGTGTGGTGCCTGTGTTGGTCTCTATGGTGGCTTCCGACGTGGCCACCCGCCGCCGAGCGGCGTTGGTGGCGTTGATCCACCTTGCTGATGGAACTTACACGAACAAGGCTATGATAGTGGAGGCAGGAATATTATCCAAGCTGCCAAACACAATTGACCTTGTGGATGATTCAACAATCAATGAATTTGGTGAGTTGCTATTATCTTTGTCTTCTCTAGCAAACACTCAATTCCATTTTCCTTCACTAGACTTTCTACCATCACTCCGACACATTCTTCAGTCAAACTCAAGCTTTGACACAAAAACATCATGTTTGGGTGCCCTATACAACTTCTCAACCGTGTTAGAGAATGCAGGACCTTTGGTTTCAACAGGGATTGTTCCTATTTTATTAGAACTATCCTCAACAAAAGAAACTTCAGAGAAAGCATTGGCAACTCTAGGGAACTTGTTAGTGACCATGATGGGGAAGAAATCAATAGAGAATAGCTCTTTAGTGCCAAAGAATTTCATTGAGATCTTGTCATGGGAAGACAAACCAAAATGCCAAGAGTTATCTGTTTATATATTGATGATCCTGGCACATCAAAGTTCCAGTCAAAGGGAGAAAATGGCACAAGCAGGGATTGTTCCTGTGCTTCTTGAAGTGGTTCTGTTGGGAAGTTCTTTGGCTCAGAAGAGAGCATTGAAACTACTACAATGGTTCAAGGACGAGAGGCAAACCAAGATGGGCCCACATTCGGGCCCACAAACACCGAGGTTTGCATCAATGGGGTCCCCGGTGAATCAAAGAGAAGCAACGGAAGGAAAAAAGATGATGAATAATTTGGTTAAACAAAGCTTGCATAGGAACATGGAGATTATTACTCGGAGAGCTAATGTTGCTGGAAACTCTTCTTCTAGATTTAAGTCATTGGTTATTAGCACTAGTTCTAAGAGTTTGCCTTATTAG 1341 0.431 MHAISSPPPSSPSSSSSNSIWVLSSIKLQFFARIRRFLQSKATRKRRSQSRNRADEQNNNKIESDETVRVMEKHGDDEKEEEEEDSAMILQRTVKKLHFGSWEEKEMAAMDIEKLAKEDLKVRKLITELGVVPVLVSMVASDVATRRRAALVALIHLADGTYTNKAMIVEAGILSKLPNTIDLVDDSTINEFGELLLSLSSLANTQFHFPSLDFLPSLRHILQSNSSFDTKTSCLGALYNFSTVLENAGPLVSTGIVPILLELSSTKETSEKALATLGNLLVTMMGKKSIENSSLVPKNFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPVLLEVVLLGSSLAQKRALKLLQWFKDERQTKMGPHSGPQTPRFASMGSPVNQREATEGKKMMNNLVKQSLHRNMEIITRRANVAGNSSSRFKSLVISTSSKSLPY 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211622g00017 446 MobiDBLite consensus disorder prediction 371 391 - -
Stsc211622g00017 446 SUPERFAMILY ARM repeat 94 365 IPR016024 -
Stsc211622g00017 446 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 22 446 - -
Stsc211622g00017 446 MobiDBLite consensus disorder prediction 374 391 - -
Stsc211622g00017 446 Gene3D - 89 287 IPR011989 -
Stsc211622g00017 446 Gene3D - 288 371 IPR011989 -
Stsc211622g00017 446 SMART arm_5 119 159 IPR000225 GO:0005515
Stsc211622g00017 446 SMART arm_5 161 201 IPR000225 GO:0005515
Stsc211622g00017 446 SMART arm_5 243 282 IPR000225 GO:0005515
Stsc211622g00017 446 MobiDBLite consensus disorder prediction 41 86 - -
Stsc211622g00017 446 MobiDBLite consensus disorder prediction 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211622g00017 Stsc-Chr211622 74413 77760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211622g00017 103 425 U-box Gene Family AT1G67530 28.107 4.11e-18 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211622g00017 - - adu:107468248 702.205