Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211621g00010 ATGGAGGACCAAGCGAATCAGAACCAAGGCCAAGTTCCTCCACTGCCGCAGCCTCCGCCACTTCCGGCGACGGAATCTGAACCACCGGCGGAGGAGGAGGAAGAGGAGGAAGAAGACGATTCCAAGAAAGAGGAGGAGGAGCTTGTCGCCAAGGTTAACAGGCTCATGGAGAAGATCACTTCTGCGCCCGATAACCCTAAGCCCGCGGTTCTCCACGCCCTATCCTCTATCCTCGAAACGCAAGAGTCACGATACATGGAAGAGAATGGTCATTCTTCTTCAAGTAATGCCCGTGCTGCCCATAACATTGGGCGCCTTGGGAGCTTAATTCGGGAAAATGATGAGTTCTTCGAGTTGATATCTTCCAAGTTTCTGGCAGAAACGACGTACTCAACTGCGGTTCAAGCTGCCACTGCTAGACTTCTCTTATGCTGTTCACTGACTTGGATTTATCCTCATGTTTTTGACGAACCTGTAATGGACTGCATCAAAGAGTGGGTGCTGGATGATAATGGTAGATTGTCTGCTGAAGAGCAACATCTGAAGCATAACTCAGGGAGAAGGGATGCCTCAGATTCTGAAATGTTGAAAACATATTCAACGGGACTTCTTGCTGTGTGTTTGGTCAGTGGAGGTCAAGTTGTGGAGGACGTCTTGACATCTGGATTGTCAGCTAAGCTTATGCGTTATCTCCGTCTGCGTGTGCTTGGTGAGACAAGTAGCAGCCAGAAAGAGGTTACTCATGTCACAGATAGTAGGCATGCATCAGGGAATTCAGTCAGAATTAGAGATGATGGTCGTGGAAGGTTTCGCCAGCTCTTGGAATCTAGTCATTTAGATGATTCAAGGATGGTTGATGATAAATCTTTAGATGATATATCTCTTGAAAGGGGTTCTGATAAATGCATTAGTGGACAAGAAGATTCTTGGGTTGAAGGCGAGCCCCCCAACTTGCTAGACAAAAGTGCTGATATCCGTGAGGCAGATGCTGATGATGAGGACAGATGGCACTGTAGAGATATAAGTGATGGAAGGATAAAATATGGCGAGCATGATGACAATCTGAGAGATGACTCTTCGCGGAGGCGCACAAATCGTGGAACTGGAAGATCCAAAGGAAAAGGAAGGGTCAACGAAGGGACTGTAGAAAGTGAAGCCATTCTTTCATCTCCTGGTTCTGGTAGTCGATTAGGGCAGGGCCGTAGTGTTAGAGATAGGACCCTGCCGAGGAATGTCGATGTTAGAAGGGCGCCTGATTCCAAAAAGAATGCTAGGACAACTTCTGATGCTTCTGTTTTGGAAAGAGGAGATAATGATGATTGCTTCAGAGACTGCTGTATTGGAAGTAGAGATATTTCTGATATTGTTCGGAAAGCAGTCTGTGCTGCTGAAGCTGAAGCCAGATCTGCCAATGCACCTGAAGAAGCTGTTAAAGCCGCAGGTGATGCAGCTGCTGACCTTGTTAAAACCGCAGCGTCAGAGGAATTTAAATCCACTAATGATGAAGATACTGCTGTTTTGGCTGCTTCAAAGGCTGCATCAACTGTTGTTGACGCTGCATCTGCAGTTGAGGTTTCAAGGAGCTCCATCAGTATTAATACTGAAACAGAGAATGTGAGTGGTGCAGAACCGGAAATTGTTGAGGATGTTGAAGAGTACTTCATCCCAGATACTCAATTTCTTGCACAATTACGGGAGAAGTATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTTCTTGGTCCCGTGTTACATGAAAAGGGAGTAGATGTGTGTCTTGCTCTTCTGCAGCAAAATTCCAAACATAGGGAGGCATCCAAGGTTGCTTTACTGTTGCCTGATGTCATGAAGCTGATATGTGCTTTGGCTGCTCATAGGAAATTTGCTGCATTATTCGTGGACCGTGGGGGAATCCAAAAGCTGCTAGCTGTCCCTAGAATGGCCCAAACTTACTTTGGGCTATCATCTTGTCTATTTACCATTGGTTCCCTTCAGATTGCCTACCACACTTGTGTCGCTTTGCGACAATATTTCAGAGCACATCTCCTGTTATTAGTTGATTCAATTCGCCCAAACAAAAGTAACCGCAGTGCTGCTAGGAATATCCCAAGTGTAAGGGCTGCGTACAAGCCACTTGACATCAGTAATGAGGCCATAGATGCAGTCTTCCTACAATTACAAAAAGATCGGAAGCTTGGTCCTGCATTTGTAAGAACTCGTTGGCCAGCTGTGGAGAAATTCTTGGCTTATAGTGGCCATATTACCATGTTGGAATTGTGTCAGGCCCCACCTGTGGAACGATATCTGCATGATTTGCTCCAGTATGCATTGGGTGTTCTGCATATTGTGACTTTGGTACCTAGCAGTCGAAAGATGATTGTAAATGCAACACTAAGCAATAATCGTGTTGGTATAGCAGTGATTTTGGATGCTGCAAATATTGTTAGTAGTCATGTGGATCCAGAGATCATCCAGCCAGCATTAAATGTTTTAGTCAACCTTGTTTGCCCTCCACCTTCAATCAGCAATAAACCTGCTTTGGCTACACAGAGTCAACAGTCTGCTTCTGGCCAGACCTCAAACGCTCCACCCTTGGAGGGTAGAGATAGGACTGCTGAACGTAATAACCCTGATCGAGCAGCCCCTGTTACCAACCAGATTGATGCTAGGGAAAGGAATGGGGAATCCAGTGCTGTAGATCGAAGCACGACGACAGTATCTAGTTCACAAACTGTAAATAACACCCCACAGACTCCTGGTCCTGCTGCAACCTCAGGATTAGTTGGCGACCGGAGAATCACTCTGGGTGCTGGAGCAGGTTGTGCTGGCCTTGCTGCACAACTAGAACAAGGATATCGTCAGGCAAGAGAAGCTGTTCGTTCTAATAATGGTATAAAGGTTCTTTTGCATCTCCTCCAACCACGCATATATTCACCACCTGCTGCTCTAGATTGCCTTCGTGCTCTAGCATGTCGAGTCTTACTTGGATTAGCTAGAGACGATACAATTGCACATATATTGACGAAGCTTCAGGTTGGGAAAAAGCTTTCCGAGCTAATTCGAGATTCAGGCAGCCAGACAACTGGAACAGAGCAGGGCAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGTTGATTGGGATTGTGACTAATTCAGGGCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACCTTGAGGCGCATAGAAAGAGCAGCTATAGCTGCTGCTACTCCGATTACATACCATTCAAGGGAACTTTTGCTCCTAATTCATGAACACCTACAGGCGTCTGGATTGACACAAGCTGCTTCTACATTGCTTAAAGAGGCTCAATTGACTCCCTTACCATCATTGGCTGCTCCATCTTCTCTTACACAACAGCCAACTACACCAGAAGTTTCTTCAACATCAATTCAGTGGCCATCCGGCCGGGCCCCTTCTGGATTTCTCACGAATAAATTAAAGGCTAATGGAAGGGATGAGGATGCCAGCTTGAAAAGTGATTATTACTCTGCAAAGAAGAAGTCATTGACCTTCTCATCATCTTTTGGTTCACATTCAAAACGTCACCTTGCCGATTCACAGCAGCCTTCATCCAGAAAATGGTTAAGTGCTGGGAAGGAATCTTCAGATACTAGTATTCTAGAGATGGCATCTGAATCTTCAGGGAAACATAACATCGATCCTGGATCTCAGTATAAGACTCCAATCATGCCAACAAAGCGCAAGTTTTCTGATTTAAAGGATATAGGAATGTTCTCATCATCTGCCAAGCGGTTAAATGTTGGTGATCAAGGACTTCGTTCTCCTATTTTTTCAACTTCAATTCGGAAAAGCACCCAGCATGCTGATGCTGCTGGTCTTTCTACACCAATTTCTAACCTAAGAAATGCGCCTTCCAATGTGACTGCTCGGCTTGGTACAAGAGAATTTAAACTTGCATATGGAGGAGTGCACGGGAATCGCAAGGATCGGCAATTTGTTTACAGCAGGTTTAGGCCATGGAGAACTTGTAGAGACGATGCCGGTGCCTTGTTAACATGCATTACCTTTCTTGAGGACTCCTCTCATATTGCTGTTGGCAGCCACAATGGGGAGCTAAAATTGTTTGACTCTAACAACAACAACGTGGTGGAGAGCTACACTGGTCACCAGTCTCCTTTGACGCTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTGTTGCTTTCATCGAGCTCCCAAGATGTTAGGCTGTGGGATGCAGCATCAATTTTGACTGGTCCTACCCATTCATTTGAAGGGTGCAAGGCTGCCAGGTTTAGCCATTCTGGAAATGTCTTTGCGGCCTTGTCAACAGAATCTACAAGGCGGGAAATCCTGTTATATGATATCCAAACTTGTCAGCTAGAATCGAAGTTGACAGATACATTTGCAGCTTCTACTGGACGAGGTCATGTGTATTCTTTGATCCACTTTAGCCCCTCTGACTCAATGTTGCTTTGGAATGGTGTCTTGTGGGATCGGCGGGTTTCTGGGCCTGTTCATCGTTTTGATCAGTTCACAGACTATGGAGGTGGAGGCTTTCATCCTGCTGGTAACGAGGTAATTATAAACTCAGAAGTCTGGGATCTGCGAAAGTTCAGGCTACTACGTAGTGTGCCTTCATTAGATCAAACATCAATAACATTCAATGCACGTGGTGATGTAATGTATGCTATCTTGAGGAGAAATCTTGAAGATGTGATGTCAGCAGTTCACACACGTCGCGTCAAGCATCCTCTTTTTGCTGCGTTCCGCACAGTCGATGCAATAAATTATTCTGACATAGCTACTATACCTGTGGATCGCTGTGTCCTTGATTTTGCAACTGAGCCAACAGATTCATTTGTCGGGTTGATTACAATGGATGATCAAGACGAGATGTATGCATCGGCTAGAGTCTATGAAATTGGTCGCCGGAGACCAACTGATGATGATTCTGACCCTGATGATGCAGAAAGTGAGGAGGAAGATGAGGACGACGACGATGATGATGGTGATGTAGATCCACTATTAGGCCCTGGTTTCCGTGGTGAGAGCGATAGTGATCCTGATGACATGAGCAATGATGATGATGATAGTATAAGTGAGCTTGATGACGATGAAGATGGTGACTTCATGTTGGATGATGTTGAGTTCGATGGAGGACCTGGGATATTGGAGATTTTGACGGAGGGGGAAGAAGGGGATGATGATGAAGATAGTGAAGTGCTCGAATCATTAAGTAGCGATGAAGAGGATTATGTGGGTAATGGCTTTGGTTATTAA 5310 0.4546 MEDQANQNQGQVPPLPQPPPLPATESEPPAEEEEEEEEDDSKKEEEELVAKVNRLMEKITSAPDNPKPAVLHALSSILETQESRYMEENGHSSSSNARAAHNIGRLGSLIRENDEFFELISSKFLAETTYSTAVQAATARLLLCCSLTWIYPHVFDEPVMDCIKEWVLDDNGRLSAEEQHLKHNSGRRDASDSEMLKTYSTGLLAVCLVSGGQVVEDVLTSGLSAKLMRYLRLRVLGETSSSQKEVTHVTDSRHASGNSVRIRDDGRGRFRQLLESSHLDDSRMVDDKSLDDISLERGSDKCISGQEDSWVEGEPPNLLDKSADIREADADDEDRWHCRDISDGRIKYGEHDDNLRDDSSRRRTNRGTGRSKGKGRVNEGTVESEAILSSPGSGSRLGQGRSVRDRTLPRNVDVRRAPDSKKNARTTSDASVLERGDNDDCFRDCCIGSRDISDIVRKAVCAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEFKSTNDEDTAVLAASKAASTVVDAASAVEVSRSSISINTETENVSGAEPEIVEDVEEYFIPDTQFLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREASKVALLLPDVMKLICALAAHRKFAALFVDRGGIQKLLAVPRMAQTYFGLSSCLFTIGSLQIAYHTCVALRQYFRAHLLLLVDSIRPNKSNRSAARNIPSVRAAYKPLDISNEAIDAVFLQLQKDRKLGPAFVRTRWPAVEKFLAYSGHITMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNATLSNNRVGIAVILDAANIVSSHVDPEIIQPALNVLVNLVCPPPSISNKPALATQSQQSASGQTSNAPPLEGRDRTAERNNPDRAAPVTNQIDARERNGESSAVDRSTTTVSSSQTVNNTPQTPGPAATSGLVGDRRITLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTTGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLTQAASTLLKEAQLTPLPSLAAPSSLTQQPTTPEVSSTSIQWPSGRAPSGFLTNKLKANGRDEDASLKSDYYSAKKKSLTFSSSFGSHSKRHLADSQQPSSRKWLSAGKESSDTSILEMASESSGKHNIDPGSQYKTPIMPTKRKFSDLKDIGMFSSSAKRLNVGDQGLRSPIFSTSIRKSTQHADAAGLSTPISNLRNAPSNVTARLGTREFKLAYGGVHGNRKDRQFVYSRFRPWRTCRDDAGALLTCITFLEDSSHIAVGSHNGELKLFDSNNNNVVESYTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDAASILTGPTHSFEGCKAARFSHSGNVFAALSTESTRREILLYDIQTCQLESKLTDTFAASTGRGHVYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARVYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDGDVDPLLGPGFRGESDSDPDDMSNDDDDSISELDDDEDGDFMLDDVEFDGGPGILEILTEGEEGDDDEDSEVLESLSSDEEDYVGNGFGY 1769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1698 1724 - -
Stsc211621g00010 1769 Gene3D - 1339 1663 IPR015943 GO:0005515
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 242 263 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 846 868 - -
Stsc211621g00010 1769 SMART WD40_4 1381 1421 IPR001680 GO:0005515
Stsc211621g00010 1769 SMART WD40_4 1426 1464 IPR001680 GO:0005515
Stsc211621g00010 1769 SMART WD40_4 1338 1378 IPR001680 GO:0005515
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 347 365 - -
Stsc211621g00010 1769 ProSiteProfiles LIS1 homology (LisH) motif profile. 1089 1121 IPR006594 GO:0005515
Stsc211621g00010 1769 SMART Lish 1089 1121 IPR006594 GO:0005515
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 347 431 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 298 320 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 846 930 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1649 1769 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1187 1244 - -
Stsc211621g00010 1769 Coils Coil 31 51 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 247 263 - -
Stsc211621g00010 1769 FunFam DDB1-and CUL4-associated factor homolog 1 1336 1663 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1125 1153 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1 47 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 383 397 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1662 1683 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1738 1757 - -
Stsc211621g00010 1769 PANTHER VPRBP PROTEIN-RELATED 1302 1764 IPR033270 GO:0016567
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 27 43 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 901 925 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 406 423 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 12 26 - -
Stsc211621g00010 1769 MobiDBLite consensus disorder prediction 1187 1236 - -
Stsc211621g00010 1769 SUPERFAMILY WD40 repeat-like 1339 1570 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211621g00010 Stsc-Chr211621 40520 48518 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211621g00010 1365 1571 U-box Gene Family AT2G33340 25.446 5.67e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211621g00010 K11789 - thj:104803889 1532.69