Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211618g00010 ATGGCATTATGCTTGAAGCCACCAAGACTACACCACAGCAACAACAATGAAGAAGACTCTGTAATCTTCTTGCCGCCACCACCACTAATAAATCAATTCAAAACTGCATATAAACTTCACGTCAAAAACCTCTCCTATACTCTGCACCAAAATAAAACCTCTCCTTTCTCCCAAAAGCTTAAAGCCGTGACGATTCTCAAGTCTGTGACTTTTGTTGCCAGGTGTTCAGAGATAGTTGCGGTGGTGGGACCCAGCGGCACCGGAAAGTCCACCCTTCTCCGGATAATCTCCGGCCGCGTGAAAGGAAAAGATTTCGATCCGAAGAGCATATCAATCAATGAGCAGCCGATGACGAGCCCGGCACAATTGAGGAAGCTTTGTGGATTTGTGGCACAAGAGGACAACCTGCTTCCTCTTCTAACTGTGAAAGAAACTCTTCTGTTCAGTGCCAAGTTCAGACTGAAGGAGATGACACCAAAACAAAGAGAAATTCGAGTTGAAAGCTTGATTCAAGAGCTAGGCCTTTCCCACGTTGCGGATAGTTTCGTTGGAGATGAAGAGAACAGAGGTATATCAGGTGGCGAGAGGAAAAGAGTTTCAATTGGGGTTGACATGATTCACAACCCTCCAATTTTGCTCTTAGATGAACCGACATCAGGCTTAGACAGCACTTCAGCATTGCATGTTATAGAGCTTCTTTCTTCGTTAGCCAGAGCAAAAAAGAGAACAGTGGTTCTCTCAATCCACCAACCTGGTTACAGAATACTCCGCTACATTTCCAAGTTCTTGATCCTCTCCAATGGCTCCGTGGTTCACAACGGTAGCCTAGAATCCCTTGAGGAATCCATTACAAAATTGGGCTTTCAGATTCCCATGCAACTCAATGCTTTAGAATTCTCCATGGAAATCATAAGCAGATTACAAGATTCCAGTTCCAAAACAACTCCTCAATTGGAAGAAAACGAGCCATTATTTTCTCCAAATCCCATGTGCCCTGCGGTGGAAGAAAACACCGCTAGTGCCGGAATTTTCCAATCACAATACAATTTCAAAAACATGATGGACAATTTTAGTAAGTTTTGTTATGCAAACTTGGTTGAGATATTCTTCCTTTGCTCAAGATTCTGGAAGATTATTTACAGGACAAAGCAGTTATTCTTAGCAAGAACAATGCAAGCATTGGTTGGTGGATTTGGGTTAGGGAGTGTTTACATAAAGATAAGGAAGGATGAAGAAGGAGGAGTAGCTGAAAGGTTAGGATTATTTGCATTTAGTCTTAGTTTCTTGTTATCTTCTACGGTTGAAGCGCTTCCAATATACCTTCAAGAAAGGCGTGTTCTGATGAAAGAATCTTCAAGGGGAGCCTATAGAATCTCCAGTTACATGATAGCAAACACTTTTGTGTTCCTTCCTTTCTTGTTTGTAGTTTCGATTTTGTTTGCAGTTCCAGTGTATTGGATCGTAGGACTCAACCCTTCAGTCGGCGCCTTCGCCTTCTTCGCTTTTGTGGTGTGGCTAATCGTTCTCATGGCGAGTTCTCTCGTGCTCTTCTTGAGCGCGGTGTCACCGGATTTCATCTCCGGGAACTCTCTCATTTGCACGGTCCTCGGAGCCTTCTTCCTCTTCTCTGGATACTTCATTCCAAAGGATAGCATACCAAAGTATTGGATTTTCATGTACTATGTGTCACTCTATAGGTACCCTTTGGATGCACTCATCACAAACGAGTATTGGAATAAAAGAAATGAGTGCCTCTCGTCATCTTATTCTAAGTGCTTGACTACTGGGTTTGATGTGTTGAAGAGTAGAGGGCTTGAAAAGGATGAAAGGTGGATCAATGTTGGAATAATGTTTGGATTCTTTATCTTCTATCGTCTTCTTTGTTGGCTTATACTTGCACGAAAGGCCTCCAAGACAACAATATGA 1926 0.4273 MALCLKPPRLHHSNNNEEDSVIFLPPPPLINQFKTAYKLHVKNLSYTLHQNKTSPFSQKLKAVTILKSVTFVARCSEIVAVVGPSGTGKSTLLRIISGRVKGKDFDPKSISINEQPMTSPAQLRKLCGFVAQEDNLLPLLTVKETLLFSAKFRLKEMTPKQREIRVESLIQELGLSHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALHVIELLSSLARAKKRTVVLSIHQPGYRILRYISKFLILSNGSVVHNGSLESLEESITKLGFQIPMQLNALEFSMEIISRLQDSSSKTTPQLEENEPLFSPNPMCPAVEENTASAGIFQSQYNFKNMMDNFSKFCYANLVEIFFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKIRKDEEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERRVLMKESSRGAYRISSYMIANTFVFLPFLFVVSILFAVPVYWIVGLNPSVGAFAFFAFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKDSIPKYWIFMYYVSLYRYPLDALITNEYWNKRNECLSSSYSKCLTTGFDVLKSRGLEKDERWINVGIMFGFFIFYRLLCWLILARKASKTTI 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211618g00010 641 Pfam ABC-2 type transporter 368 577 IPR013525 GO:0016020|GO:0140359
Stsc211618g00010 641 Gene3D - 39 322 IPR027417 -
Stsc211618g00010 641 SMART AAA_5 75 269 IPR003593 GO:0016887
Stsc211618g00010 641 Pfam ABC transporter 66 219 IPR003439 GO:0005524
Stsc211618g00010 641 ProSitePatterns ABC transporters family signature. 191 205 IPR017871 GO:0005524|GO:0016887
Stsc211618g00010 641 FunFam ABC transporter G family member 23 57 290 - -
Stsc211618g00010 641 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 39 292 IPR003439 GO:0005524
Stsc211618g00010 641 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 626 - -
Stsc211618g00010 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 284 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211618g00010 Stsc-Chr211618 67188 70020 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211618g00010 63 279 Calmodulin-binding Proteins AT2G36910 30.769 1.50e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211618g00010 K05681 - gmx:100783883 950.658