Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211618g00008 ATGGCTGACCATGGCATCACAATGTCGCTTTCCCACACCTCTGACTCCTCCTCCTCGGAGCACAACACCCCCGCCACCGTTGCTGCCGTCGCCTCCAGGAGGCTCCCACCTTCGTCGTCCGCCGGGAAAATCTCATCATACCACCATGCGCTTTCCGAGCCGCCGCCTCAGAAGAAGCCACGTGGCAGGCCTCCGGGTTCAAAGAACAAGCCGAAGCCGCCAGTTGTCATCACCCAAGAAAGCGACCAAGTGATGAAGCCGGTGGTGATCGAGGTTGCCGCCGGTAATGACGTGGTGGATGCGGTGGTGACGTTTGCTCGAAGGCGCCAGGTAAGCATCTCGGTGCTGAGTGGTTCAGGAACCATTGCTAACGTCACCTTACGTCACCCTTATTCACATGCTCCTGCATTAACTCTCCATGGACCGTTCACCTTGTTGTCCTTTACCGGAAGCTACATCTCTGGCCCTTTCTCTCCTTCACCACCTCCTCGTCCTCTTCCTCTTGTCTCTTCCGCTTCAGCTTCAGCTCCAACGATTCTTTGTTCTTCTGCTGCTACTGCTGCCCCAACCAACCCAATCCCCACCAGCTTCGCTGTTTCCTTCTCCGGCTCCCAGGGTCAGATCTTCGGCGGAGTTGTTGCCGGGGCACTCGTGGCGGCGAGCACGGTGGTGGTGTCCGCCTCTGTCTTCAAGAGGCCTGAATATCACCAGGTTGGGTTGAATCCGAATGCTGATGCTGGTGCTGGTGGCGGTGGCCGTGATGATAAAGACGATGCTGATCGCCATAATAATAATAATAATAACCATGGTAATGCAGGTGGTGGTGATCACGGTTGTGGTGCAGTTGTGAATGAGAATGCGAACCCTCTGACTACTGTGTTCAATGTGGGGAATGCTGGCGGTGGTGGAGGAAACGGCTTGAATAATTGCCACCCTGGTGATGTGAACGTCATGCAATGGGGCCACACACTCTCGGCCTCTCGCTCTGCCAACTACTGA 999 0.5576 MADHGITMSLSHTSDSSSSEHNTPATVAAVASRRLPPSSSAGKISSYHHALSEPPPQKKPRGRPPGSKNKPKPPVVITQESDQVMKPVVIEVAAGNDVVDAVVTFARRRQVSISVLSGSGTIANVTLRHPYSHAPALTLHGPFTLLSFTGSYISGPFSPSPPPRPLPLVSSASASAPTILCSSAATAAPTNPIPTSFAVSFSGSQGQIFGGVVAGALVAASTVVVSASVFKRPEYHQVGLNPNADAGAGGGGRDDKDDADRHNNNNNNHGNAGGGDHGCGAVVNENANPLTTVFNVGNAGGGGGNGLNNCHPGDVNVMQWGHTLSASRSANY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211618g00008 332 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 271 IPR014476 GO:0003680
Stsc211618g00008 332 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 231 IPR005175 -
Stsc211618g00008 332 ProSiteProfiles PPC domain profile profile. 82 254 IPR005175 -
Stsc211618g00008 332 MobiDBLite consensus disorder prediction 7 26 - -
Stsc211618g00008 332 MobiDBLite consensus disorder prediction 250 264 - -
Stsc211618g00008 332 MobiDBLite consensus disorder prediction 57 71 - -
Stsc211618g00008 332 CDD DUF296 86 225 IPR005175 -
Stsc211618g00008 332 MobiDBLite consensus disorder prediction 1 77 - -
Stsc211618g00008 332 MobiDBLite consensus disorder prediction 238 277 - -
Stsc211618g00008 332 Gene3D - 85 245 - -
Stsc211618g00008 332 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211618g00008 Stsc-Chr211618 50372 51370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211618g00008 58 280 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 40.000 4.75e-45 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211618g00008 - - adu:107463674 328.561