Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211617g00016 ATGGCTTTTAAGAGCTTTGAACAACAGCTTAGGGAAGAGTCAATGCAAAATCAAGATCCATCTTGGATTGGTTACATCTATGCTTTCTCCATATTTGTTGGAGTGTCACTTGGTGTTCTATGCGAAGCTCAATATTTCCAGAATGTGATGCGTGTTGGTTTTCAGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCTTTGAGGCTAACTAATGAAGGTCGACAGAAGTTCTCATCTGGGAAGCTTATGAATATGATAACTACAGATGCCAATGCACTACAGACATATGTGATTGCCAAAATGAGAAAACTGACAAAGGAAGGACTGCAGCAAACAGATAAAAGGGTTGGTATCATGCATGAAATTCTGGCTGCCATGGATACTGTAAAATGCTATGCATGGGAAACAAGCTTTCAATCTAGAGTACAAAGCATACGGGATTATGAGCTATCATGGTTTCGCAAAGCACAACTGTTAAATGCTCTCAATACTTTTATTCTAAACAGCATCCCAGTTCTTGTGACTGTAACATCATTTGGGATGTTTACTTTACTTGGTGGAGATTTGACACCTGCAAGGGCGTTTACCTCGCTATCTCTATTTGCAGTTTTGCGCTTTCCATTAAACATGCTACCAAATTTACTAAGTCAGGTAGCAAATGCAAATGTATCGTTGCAACGGCTAGAAGAACTATTATTGACTGAGGAGCGAAATCTAAAACAAAATCCACCACTTATAGCAGGACTTCCAGCCATCTCAATAAAGAATGGAAACTTTTCATGGGATGCAGAGGCAGAGAAGCCCACACTATCAAATATCAATGTGGAAATACCAGTTGGAAGCTTAGTTGCAATTGTTGGTGGTACTGGAGAAGGAAAAACATCACTTATTTCAGCAATGATTGGAGAGCTACCTCTTTTAGATGATGGAAATGCTATAATTAGGGGCACTGTTGCTTATGTTCCTCAGATTTCATGGATATACAATGCTACAGTTCGCGAGAACATATTGTTTGGGTCAGAATTCGACTATGAACGATATTGGAAAGCCATTGATGTCACTGCATTACAGCATGATCTCAACTTATTACCTGCACGTGATTTTACAGAGATTGGAGAAAGAGGAGTCAATATTAGTGGTGGACAGAAGCAAAGAGTTTCCTTAGCTAGGGCAGTCTATTCAAATTCAGATGTATATATATTTGATGATCCTTTAAGTGCTCTTGATGCTCATGTTGCTCATGAGGTTTTCAAAAACTGTATAAAGGAAGGTCTGGGAGGAAAAACAAGGGTTCTTGTCACCAACCAGCTACATCTTCTCCCTCAAGTGGATAAAATTATTCTAGTTAGTGAGGGCATGATTAAGGAGCAGGGAACTTTTGAGGAGTTATCAAAGAGTGGGTTTTTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAATCAGAGAGTAGTGAAGGTAGAGAGGACCATGTCGATGCTAATGTTTCGACCTCGAGCAATGAGGCACTTGTTCAGATACCAAATGATGCAAGCTATGAGAAGAAGGGAAAGTTACGCAAATCAGTACTTGTTAAGCAAGAAGAGCGGGAAACTGGTGTGGTTAGCATGAAAGTTTTGGTGAGGTACAAATCTGCATTAGGAGGCCTATGGGTAGTTTCCATACTCTTAGCCTGCTATACATTAACAGAAGTTCTTCGAATTTCAAGTAGTACATGGTTAAGTGTGTGGACAGATCAAGATTCCAATTCAGATTATAACCCAGCATATTTTCTTGCCATCTATGCACTTTTCTCATTTGGACAGGTATCTGTAACACTTACAAACTCTTATTGGCTGATCATTTCTAGCCTCCGTGCTGCAAAAAGATTGCATGACGCAATGCTAGATAAAATACTTCGGGCCCCAATGGTATTCTTCCAAACTAATCCTGTTGGCCGCATAATTAATAGGTTTGCAAAAGACATGGGGGACATAGACACCATGGTTTCTAATATAGGGAATCAGTTTATGGGGCAACTCTGGCAGCTACTTTCGACCTTTGTTCTTATTGGCACTGTGAGCACAATTTCTCTGTGGGCTATAATGCCATTGCTGATCTTCTTTTATGGAGCTTATATATATTATCAGAGCACAGCTCGAGAAGTGAAGCGTTTGGATTCAATTACAAGATCTCCTGTTTATGCACACTTTGGAGAAGCATTGAATGGTTTGTCAAGCATCCGTGCTTACAAAGCATATGATAGGATGGCTCACATTAATGGAAGGTTCATGGATAAAAATATCAGATTTACCCTTGTGAATATCAGTTCGAACCGTTGGCTCACCATAAGGTTAGAATCATTAGGAGGCCTCATGATTTGGTTCATAGCTACATTTGCTGTATTGCAAAATGGAAGAGCTGAAAACCAGGCAGCGTTTGCTTCTACAATGGGCCTTCTTCTCAGTTATACTCTAAACATAACAAGTCTATTGAGTGGTGTCCTTAGACAAGCAAGTAGAGCTGAAAATAGTTTAAATGCTGTTGAGCGTGTTGGCACTTACATTGATTTGGAAACCGAGGCTCCAAGAATAATCGAGACAAACCGTCCACCACCAGGATGGCCAACATCTGGATTACTTGAGTTTGAGAATGTTGTCCTGAGATACAGGCCTGAACTTCCTCCAGTCTTGCATGGATTGTCCTTTACGGTATTGCCAACCGAGAAGGTTGGGATAGTTGGAAGAACCGGTGCAGGAAAATCTAGCATGCTTAATGCTTTATTCCGCATCGTTGAGCTACAAAGTGGAAGAATCATTATTGATGGTTTTGACATTGCTACATTTGGACTAGAAGATTTGAGAAAAGTTCTAACTATCATTCCACAATCACCAGTTCTTTTCTCTGGAACTGTTCGTTTCAATCTTGATCCATTTGGTGAACACAATGATGCTGATATGTGGCAAGCTTTAGAAAGGGCACATTTGAAGGATGTAATAAGAAGAAATCCACTTGGTCTAGATGCACAGGTCTTGGAGGGTGGAGATAATTTTAGTGTTGGACAGAGGCAACTATTAAGTCTAGCTCGAGCATTGCTTCGAAGATCAAAGGTTCTTGTCCTGGACGAAGCTACTGCTGCGGTTGATGTTAGAACTGATGCTCTTATACAGAAAACCATCCGACAAGAGTTTCAGTCCTGCACAATGCTCGTCATTGCACACAGACTAAACACAGTTATCGACTGCAATCGGATTCTATTGCTCAATTCTGGACGGGTTCTCGAGTATGACTCGCCGGAGGAACTCTTATCAAATGAAGCAAGTGCATTCTACAAGATGGTTCAAAGCACAGGAGCTGCAAATGCTGAGTATTTATGTAGTATAGTTTTCGGAAGGATTGTATACAATTCTAATGGAGAAAACAAGGGACTCGAAAGCCAAATGAAACAGTTAGCTTCTAGCCACTGGGCTGCTGCTACACAATGTGCCATAGCTGCAACCCTTTCATCATTGCACGTTAACCTTCAAATCCCAAATAAAACTAATGACAACAAAGATATCCTCGACAGAATGAAGGACGCGTTGACAATACTTCAGGAGGTTCTGGAAGGGAAGCATGATGATGTTATACAACAGACACTTACTAAATACAATGTTCCTGCAGAAAGATGGTGGTCTACTCTCTATAGACTAGTTGAAGGTCTGTCTGTCTTGACCAAGTTACCTCCCAAAAACATTCAACAATTAGAACTTGATTTTGAAGGAAGGTCCTTTTACTGA 3771 0.4033 MAFKSFEQQLREESMQNQDPSWIGYIYAFSIFVGVSLGVLCEAQYFQNVMRVGFQLRSTLVAAIFRKSLRLTNEGRQKFSSGKLMNMITTDANALQTYVIAKMRKLTKEGLQQTDKRVGIMHEILAAMDTVKCYAWETSFQSRVQSIRDYELSWFRKAQLLNALNTFILNSIPVLVTVTSFGMFTLLGGDLTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELLLTEERNLKQNPPLIAGLPAISIKNGNFSWDAEAEKPTLSNINVEIPVGSLVAIVGGTGEGKTSLISAMIGELPLLDDGNAIIRGTVAYVPQISWIYNATVRENILFGSEFDYERYWKAIDVTALQHDLNLLPARDFTEIGERGVNISGGQKQRVSLARAVYSNSDVYIFDDPLSALDAHVAHEVFKNCIKEGLGGKTRVLVTNQLHLLPQVDKIILVSEGMIKEQGTFEELSKSGFLFQRLMENAGKMEQQSESSEGREDHVDANVSTSSNEALVQIPNDASYEKKGKLRKSVLVKQEERETGVVSMKVLVRYKSALGGLWVVSILLACYTLTEVLRISSSTWLSVWTDQDSNSDYNPAYFLAIYALFSFGQVSVTLTNSYWLIISSLRAAKRLHDAMLDKILRAPMVFFQTNPVGRIINRFAKDMGDIDTMVSNIGNQFMGQLWQLLSTFVLIGTVSTISLWAIMPLLIFFYGAYIYYQSTAREVKRLDSITRSPVYAHFGEALNGLSSIRAYKAYDRMAHINGRFMDKNIRFTLVNISSNRWLTIRLESLGGLMIWFIATFAVLQNGRAENQAAFASTMGLLLSYTLNITSLLSGVLRQASRAENSLNAVERVGTYIDLETEAPRIIETNRPPPGWPTSGLLEFENVVLRYRPELPPVLHGLSFTVLPTEKVGIVGRTGAGKSSMLNALFRIVELQSGRIIIDGFDIATFGLEDLRKVLTIIPQSPVLFSGTVRFNLDPFGEHNDADMWQALERAHLKDVIRRNPLGLDAQVLEGGDNFSVGQRQLLSLARALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLVIAHRLNTVIDCNRILLLNSGRVLEYDSPEELLSNEASAFYKMVQSTGAANAEYLCSIVFGRIVYNSNGENKGLESQMKQLASSHWAAATQCAIAATLSSLHVNLQIPNKTNDNKDILDRMKDALTILQEVLEGKHDDVIQQTLTKYNVPAERWWSTLYRLVEGLSVLTKLPPKNIQQLELDFEGRSFY 1256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211617g00016 1256 MobiDBLite consensus disorder prediction 482 502 - -
Stsc211617g00016 1256 Pfam ABC transporter 272 407 IPR003439 GO:0005524
Stsc211617g00016 1256 Gene3D ABC transporter type 1, transmembrane domain 519 859 IPR036640 GO:0005524|GO:0016020
Stsc211617g00016 1256 Gene3D ABC transporter type 1, transmembrane domain 98 235 IPR036640 GO:0005524|GO:0016020
Stsc211617g00016 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 94 222 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211617g00016 1256 CDD ABCC_MRP_domain2 876 1096 - -
Stsc211617g00016 1256 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 15 98 - -
Stsc211617g00016 1256 Gene3D - 236 503 IPR027417 -
Stsc211617g00016 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 878 1112 IPR003439 GO:0005524
Stsc211617g00016 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 869 1111 IPR027417 -
Stsc211617g00016 1256 Pfam ABC transporter 895 1043 IPR003439 GO:0005524
Stsc211617g00016 1256 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 256 478 IPR003439 GO:0005524
Stsc211617g00016 1256 CDD ABC_6TM_ABCC_D1 17 229 IPR044746 GO:0140359
Stsc211617g00016 1256 Gene3D - 861 1114 IPR027417 -
Stsc211617g00016 1256 Coils Coil 213 240 - -
Stsc211617g00016 1256 FunFam Multidrug resistance-associated protein member 4 862 1114 - -
Stsc211617g00016 1256 FunFam ABC transporter C family member 2 521 859 - -
Stsc211617g00016 1256 SUPERFAMILY ABC transporter transmembrane region 555 858 IPR036640 GO:0005524|GO:0016020
Stsc211617g00016 1256 Gene3D ABC transporter type 1, transmembrane domain 5 97 IPR036640 GO:0005524|GO:0016020
Stsc211617g00016 1256 SUPERFAMILY ABC transporter transmembrane region 20 234 IPR036640 GO:0005524|GO:0016020
Stsc211617g00016 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 559 841 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211617g00016 1256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 477 IPR027417 -
Stsc211617g00016 1256 CDD ABCC_MRP_domain1 254 454 - -
Stsc211617g00016 1256 ProSitePatterns ABC transporters family signature. 380 394 IPR017871 GO:0005524|GO:0016887
Stsc211617g00016 1256 Pfam ABC transporter transmembrane region 96 210 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211617g00016 1256 Pfam ABC transporter transmembrane region 559 804 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc211617g00016 1256 SMART AAA_5 281 461 IPR003593 GO:0016887
Stsc211617g00016 1256 SMART AAA_5 904 1097 IPR003593 GO:0016887
Stsc211617g00016 1256 CDD ABC_6TM_ABCC_D2 557 853 IPR044726 GO:0140359
Stsc211617g00016 1256 ProSitePatterns ABC transporters family signature. 1015 1029 IPR017871 GO:0005524|GO:0016887
Stsc211617g00016 1256 FunFam ABC transporter C family member 2 248 494 - -
Stsc211617g00016 1256 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 18 93 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211617g00016 Stsc-Chr211617 68500 78258 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211617g00016 236 669 Calmodulin-binding Proteins AT2G36910 25.208 2.16e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211617g00016 - - adu:107471837 2234.53