Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211617g00012 ATGCCTCCCACTCTGTTAGCAGCAGAAAAGGAAGAAGCTAAGGCTGTATTGATGCTGTTTTTGAAAAAAGAAGGCTTGAGCAATGCCATTGCAGCAAGAACCATCAACAAGTCAGATGCTTTTATTGATCACCTTGTCTCGGTGCTTCAGTCAAAACACAAATCTCGGTACCTCGTAGGGAGAGAACTTACTACTCTTGAAATCAGGGATGCTCTTATCCCATATCTTGAATCTCTTCTCGAAGAGCATGGAGATATGCTAGTTGATGTAGTCGAAAACTATCCAAACCCCCCAGTTAGGGGCAAACCAGCTGTGCAAATTCCTCCTCCTACTCCAATAATAGACTCTAAGAAGCTTAGACCCGTGTCTCGAGTTACTGAGATAGACACCACTGCTGGCAATCTTCGCCCTCATATTGTCTATCTAATGGAATTCGGCATGAGTGTTGAGCAAATCAACGGTATTATAAGGAGATTCCCATCTTTTGCCTACTACAGCTTGGAGGGTAAAATTAAGCCTGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCGAAAGAGGACATCCCTACCATCCTCACTAAAAGGCCTCAATTATGTGGAATTAGCCTGTCCGAAAATCTTAAACCCACCATGAAGTTCTTAGAGTCATTAGGCGTCGACAAGAAACAATGGGCAAAGGTGATATACCGCTTCCCAGCTCTTCTAACTTATAGTAGGGACAAGGTGGAGGAGACCATAGATTTTCTCCGAGAATTGGGCCTTTCAGAAGATAACATAGGTAAGATTTTAACTCGCTGCCCGAATATTGTAAGTTATAGTGTAGAGGACAACCTACGACCCACAGCTAACTACTTCCGTTCTTTGGGAGTGGATGTTGGTGTTCTTCTATTCCGCTGTCCACAGAATTTCGGTCTTAGCATTGAGGCCAATCTGAAGCCAGTAACAGAGTTTTTCTTGGGAAGGGGATACACTTTGGATGAAATTGGGACCATGATTTCAAGATTTGGTGCCTTGTATACCTTTAGCTTGGCAGACAATTTGATTCCAAAATGGGATTTCTTTGTGACCATGGGTTACCCAAATTCTGAGCTTGTTAAATTCCCTCAGTTTTTTGGATACAGTTTGGAAGAAAGAATTAAACCAAGATATGCACGGATGAAAAGATCCGGGGTGAGGTTATTGCTTAACCAGGTTCTGTCACTGTCTAGCAGGAACTTTGAAGAGGCCTTAGAAAAGAAACTGAAAAAGAATTCGAGTTGA 1260 0.4254 MPPTLLAAEKEEAKAVLMLFLKKEGLSNAIAARTINKSDAFIDHLVSVLQSKHKSRYLVGRELTTLEIRDALIPYLESLLEEHGDMLVDVVENYPNPPVRGKPAVQIPPPTPIIDSKKLRPVSRVTEIDTTAGNLRPHIVYLMEFGMSVEQINGIIRRFPSFAYYSLEGKIKPVVEFFLELGVPKEDIPTILTKRPQLCGISLSENLKPTMKFLESLGVDKKQWAKVIYRFPALLTYSRDKVEETIDFLRELGLSEDNIGKILTRCPNIVSYSVEDNLRPTANYFRSLGVDVGVLLFRCPQNFGLSIEANLKPVTEFFLGRGYTLDEIGTMISRFGALYTFSLADNLIPKWDFFVTMGYPNSELVKFPQFFGYSLEERIKPRYARMKRSGVRLLLNQVLSLSSRNFEEALEKKLKKNSS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211617g00012 419 PANTHER CGI-12 PROTEIN-RELATED 120 410 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 189 220 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 329 360 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 361 392 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 293 324 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 225 255 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 153 184 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 SMART mt_12 260 291 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 Pfam mTERF 133 319 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 Pfam mTERF 242 407 IPR003690 GO:0003690|GO:0006355
Stsc211617g00012 419 FunFam Transcription termination factor MTERF5 chloroplastic 196 416 - -
Stsc211617g00012 419 Gene3D Transcription termination factor 3, mitochondrial 196 416 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211617g00012 Stsc-Chr211617 52424 53769 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc211617g00012 mTERF 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211617g00012 K15031 - gmx:100781900 685.641