Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211617g00009 ATGGGAACGAAGATAGAGTTGAATTACTCGGAGCTATACAAAGTGACAGGGGGATTCTCTCAGAAGAATTTCTTGTCGGAAGGAGGATTCGGCGCGGTGTACAAAGGAAAAGTGAGTAATGGAATGATGGTGGCTGTGAAGCAGCACAAGAATGCAAGCTTCCAAGGAGAGAAGGAGTTCAAGTCAGAGGTTAGTGTTCTGAGAGAAGCAAGACATGAGAATGTTCTCATGCTGCTGGGTTCATGCTCTGAGGGACATAATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTTGATCAGCATCTCTCTCAACACTCTCGATCACCTCTTAGTTGGAAACATAGAATTAAAGTGGCAATTGGAGCTGGAAGGGGGTTATTGTATCTACACTCCAAAAACATTATTCACGGAGATTTGAGACCAAACAATATTCTTGTAACACATGATCATCTTCCTCTGTTAGGTGATTTCGGGTTAGCAAGAACTCAAAATCAGGACTCATCAATAGAAGTAGTAGCTGAAATTGCTGGATATTTGGCGCCAGAATATGCTGAATGTGGCAAATTCTCAACCAAAACAGATGTTTACTCTTTTGGTGTTGTGCTTTTGGAGCTAATAACCGGAATGAGAACCAATGACAAAAGACTTGGAGGCAGAACCCTTCTCGGATGGGCAGGGCAACTATTAAGAGAGAGGAAATATCAAGATTTAATTGATGAAAGGATTAAAGAAGACCATGATATTCATCAACTATTTTGGATGGCTCGTTTAGCTGAGAAGTGTTTTAGCAGAGACCCTCAAAAAAGACTCACTATGGCTGCGGTGGTTAATGTTTTGAATGGCATAGTGGAAAGAAGAACAATCATCAAAATGAAGGAACACATGTATTTCCCAGCTAGATTATTAGACTCATTCTACAGTGATTCTGATTCTGATAATGATCATGAAGATGGTTGA 963 0.4039 MGTKIELNYSELYKVTGGFSQKNFLSEGGFGAVYKGKVSNGMMVAVKQHKNASFQGEKEFKSEVSVLREARHENVLMLLGSCSEGHNRLLVYEYVCNGSLDQHLSQHSRSPLSWKHRIKVAIGAGRGLLYLHSKNIIHGDLRPNNILVTHDHLPLLGDFGLARTQNQDSSIEVVAEIAGYLAPEYAECGKFSTKTDVYSFGVVLLELITGMRTNDKRLGGRTLLGWAGQLLRERKYQDLIDERIKEDHDIHQLFWMARLAEKCFSRDPQKRLTMAAVVNVLNGIVERRTIIKMKEHMYFPARLLDSFYSDSDSDNDHEDG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211617g00009 320 PANTHER OS01G0253100 PROTEIN 7 288 - -
Stsc211617g00009 320 ProSiteProfiles Protein kinase domain profile. 19 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211617g00009 320 PIRSF ILK 239 298 - -
Stsc211617g00009 320 PIRSF ILK 4 220 - -
Stsc211617g00009 320 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 2 94 - -
Stsc211617g00009 320 Gene3D Transferase(Phosphotransferase) domain 1 95 300 - -
Stsc211617g00009 320 ProSitePatterns Tyrosine protein kinases specific active-site signature. 136 148 IPR008266 GO:0004672|GO:0006468
Stsc211617g00009 320 Gene3D Phosphorylase Kinase; domain 1 2 94 - -
Stsc211617g00009 320 Pfam Protein tyrosine and serine/threonine kinase 22 281 IPR001245 GO:0004672|GO:0006468
Stsc211617g00009 320 SUPERFAMILY Protein kinase-like (PK-like) 7 310 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211617g00009 Stsc-Chr211617 36186 39603 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211617g00009 7 290 Trihelix Transcription Factor Family AT5G38560 42.424 3.84e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc211617g00009 PK_Tyr_Ser-Thr 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211617g00009 - - aip:107621236 511.146