Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211617g00005 ATGGCTGGAGAAGAAGGTGAAGTTGAAGTTAAAGTTCATCCTCCTCAGCAGAGGGTAGTGATGATTCAGGATGCATCAAGAGAGGTTAATTTAGAAGCAATTATGATGGCCACCAAAAAATTCTCTCTTAAATCTGGAGATCAACTCACAATTGTTCCAATCCTTGATTGGTTCAGTAGTCCTAGTACGTTTTCTTGTTTTGGAAGAAAGCGTTTGGGTTACATGATGAGAGTTGACTCCAATTACTTTATTTCAACGAACAAGAAAGTTATTGAGGAACATAGTAAGAGATGGCTTGATCTTCGTAACAAGAACCCTGATTTCCTCGATCACTTTAAAAAGAATGAGATAGCATTCAGAGTAGAAGTGCTTGCTGGGCCTGCCACAGACATTGCTTATAATGCTGTTAGAGAGTTTCAGGCAACACGTTTGGTACTTGACAAACGGATGCACAAAGAGATAAAGCACAACCTTGACAAGTTCTCTTGCCGTCTATATAAGATAAAAGGTAACAATTCTATTGAAAGGTTGAAGCCTACAAAATTAACAGAAAATAATAACAGCACCAAACCACATAGCAAAAGGAATGAAAATGCAACCAATTCAGAAATGATTCAACCAAGTGCAGAGGAACAATCTTCATCAATGGGGTCTAGGTCATCGACATCATTATCAAGTGACATATCCTCTTCAAGCACTTTCTGGAGCACCAGTGAAGCCTCAACAACATCAACTGTTGCCACTTCACGACAACAAATAATTGACAACGTTGAAGAACAAGTAGAGTTCAAAAACGGTGTTTGCAGCAAGTGCAAGAACCGAAGACCGAGAATGGGAACGAAGATAGAGTTGAATTACTCGGAGCTATACAAAGTGACAGGGGGATTCTCTCAGAAGAATTTCTTGTCGGAAGGAGGATTCGGCGCGGTGTACAAAGGAAAAGTGAGTAATGGAATGATGGTGGCTGTGAAGCAGCACAAGAATGCAAGCTTCCAAGGAGAGAAGGAGTTCAAGTCAGAGGTTAGTGTTCTGAGAGAAGCAAGACATGAGAATGTTCTCATGCTGCTGGGTTCATGCTCTGAGGGACATAATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTTGATCAGCATCTCTCTCAACACTCTCGATCACCTCTTAGTTGGAAAGATAGAATTAAAGTGGCAATTGGAGCTGGAAGGGGATTATTGTATCTACACTCCAAAAACATTATTCACAGAGATTTGCGACCAAACAATATTCTCGTAACACATGATTATCTTCCTCTGGTGGGTGATTTCGGGTTAGCAAGAACACAAAATCAAGACTCAATACACTCAACAGAAGTGGTTGGAACATTGGGATATTTGGCACCAGAATATGCTGAATGTGGCAAAGTCTCAACCAAAACAGATGTTTACTCTTTTGGTGTTGTGCTTTTAGAGCTAATAACTGGAATGAGAACCAATGACAAAAGACTCGGAGGCAGAAGCCTTGTTGGTTGGGCAAGGCCACTATTAAGAGAGAGGAATTATCCAGATTTAATTGATGAAAGGGTGAAAGAAGACCATGATATCCATCAACTCTTTTGGATGGTTCGTTTGGCTGAGAAGTGTTTAAGCAGAGACCCTCATAAAAGACTTACTATGGCTGCGGTGGTTAATGTTTTGAGTGGCATAGTGGAAGGAAGTACATGCATCAAAATAAAGGAACACATGTATTCCCCAGCAAGATCAGACTCATTCTATAGTGATTCTGATTCTGATAATGATCTTGAAGATGAATTGCATAGCTATGAATCTGAAAGTGAGTTACCAAATCATCAAGATACAGAAGAATCCACAGCAAGTGATAGTAATCATAATACCAAAAATCAAATGATGCAACTAATTGTAAGACAACCCCCTTCTCCTCCAATATGCACCTAA 1935 0.399 MAGEEGEVEVKVHPPQQRVVMIQDASREVNLEAIMMATKKFSLKSGDQLTIVPILDWFSSPSTFSCFGRKRLGYMMRVDSNYFISTNKKVIEEHSKRWLDLRNKNPDFLDHFKKNEIAFRVEVLAGPATDIAYNAVREFQATRLVLDKRMHKEIKHNLDKFSCRLYKIKGNNSIERLKPTKLTENNNSTKPHSKRNENATNSEMIQPSAEEQSSSMGSRSSTSLSSDISSSSTFWSTSEASTTSTVATSRQQIIDNVEEQVEFKNGVCSKCKNRRPRMGTKIELNYSELYKVTGGFSQKNFLSEGGFGAVYKGKVSNGMMVAVKQHKNASFQGEKEFKSEVSVLREARHENVLMLLGSCSEGHNRLLVYEYVCNGSLDQHLSQHSRSPLSWKDRIKVAIGAGRGLLYLHSKNIIHRDLRPNNILVTHDYLPLVGDFGLARTQNQDSIHSTEVVGTLGYLAPEYAECGKVSTKTDVYSFGVVLLELITGMRTNDKRLGGRSLVGWARPLLRERNYPDLIDERVKEDHDIHQLFWMVRLAEKCLSRDPHKRLTMAAVVNVLSGIVEGSTCIKIKEHMYSPARSDSFYSDSDSDNDLEDELHSYESESELPNHQDTEESTASDSNHNTKNQMMQLIVRQPPSPPICT 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211617g00005 644 MobiDBLite consensus disorder prediction 601 619 - -
Stsc211617g00005 644 SUPERFAMILY Protein kinase-like (PK-like) 284 566 IPR011009 -
Stsc211617g00005 644 ProSitePatterns Tyrosine protein kinases specific active-site signature. 413 425 IPR008266 GO:0004672|GO:0006468
Stsc211617g00005 644 PANTHER OS01G0253100 PROTEIN 198 563 - -
Stsc211617g00005 644 Gene3D Phosphorylase Kinase; domain 1 258 371 - -
Stsc211617g00005 644 ProSiteProfiles Protein kinase domain profile. 296 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211617g00005 644 MobiDBLite consensus disorder prediction 620 634 - -
Stsc211617g00005 644 FunFam Proline-rich receptor-like protein kinase PERK8 258 371 - -
Stsc211617g00005 644 Pfam Protein tyrosine and serine/threonine kinase 299 558 IPR001245 GO:0004672|GO:0006468
Stsc211617g00005 644 MobiDBLite consensus disorder prediction 177 230 - -
Stsc211617g00005 644 SMART tyrkin_6 296 559 IPR020635 GO:0004713|GO:0006468
Stsc211617g00005 644 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X1 372 574 - -
Stsc211617g00005 644 Gene3D Transferase(Phosphotransferase) domain 1 372 577 - -
Stsc211617g00005 644 MobiDBLite consensus disorder prediction 580 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211617g00005 Stsc-Chr211617 16821 22892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211617g00005 284 566 Trihelix Transcription Factor Family AT5G38560 45.424 4.24e-76 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Stsc211617g00005 PK_Tyr_Ser-Thr 1.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211617g00005 - - gsj:114417376 687.567