Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211617g00002 ATGCCTCCCAAGAAAGATAATCACTCCGATAGCGACGAAGATGACATCTTCTACTACCGCTTCTGCTCTTCTTCCTCCTCCTCCTCCGCCGCCCAACCCCAACCCCAGGCCCAGCCCCAAGCCCAAGCCCACACCAACACCAACACCAACACCAACACTAGTGCTGCTGCTGGATCCTCTTCTTCTCTGGCTCCCTCAAAATCAACCATTTACGTTTCCAACATCGACTACTCCCTAACAAACTCCGACCTCCACACACTCTTCTCCACCTTCGGCCGCATCGCCCGCGTAACCGTCCTCAAAGATCGCCACACCCGCCTCAGCCGCGGCGTCGCCTTCATCCAATTCGTCACCCGAGACGACGCCCGCCGCGCCGCCGATCAAATGCACGGCAAGATCCTCAACGGTCGCACGCTCTCCGCCTCAATCGCCGTCGACAACGGCCGCGCTCCCGAGTTCATTCGCAAGCGCGTCTACAAGGATACCGGCCGCTGCTTCGAGTGCGGCCAGTCCGGACACCTCTCCTACGACTGTCCCCGGAACCGCCTCGGTCCTCGCCAGCGCCCGCCTCCCAAGCGTGGGAGGCGCGGCGGCGGCGGCGGCAGAGGTATGGGAAGGGGCGGGAGAGGCAGCCGGCACGGTGGGGAAGATGAAGAAGACGATGATGATGATGAGGGATCGGACGGTGGTGGTGGCGGTGCGGAGCGGTTTGAGGATGATAATTGGGCTTCGGTTGTTGATGGCGGCGCGGATGAGAGGCTTTTGGGGAGGAATGAGAAGGTTGTTGCCAAGAAGAAAGAGAAGAAAGCTGGGTACTTCAGCGATGAGAGTGATGAAGATGATGATTGA 849 0.5995 MPPKKDNHSDSDEDDIFYYRFCSSSSSSSAAQPQPQAQPQAQAHTNTNTNTNTSAAAGSSSSLAPSKSTIYVSNIDYSLTNSDLHTLFSTFGRIARVTVLKDRHTRLSRGVAFIQFVTRDDARRAADQMHGKILNGRTLSASIAVDNGRAPEFIRKRVYKDTGRCFECGQSGHLSYDCPRNRLGPRQRPPPKRGRRGGGGGRGMGRGGRGSRHGGEDEEDDDDDEGSDGGGGGAERFEDDNWASVVDGGADERLLGRNEKVVAKKKEKKAGYFSDESDEDDD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211617g00002 282 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 7 281 IPR044598 GO:0000398|GO:0005689
Stsc211617g00002 282 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Stsc211617g00002 282 SMART rrm2_1 69 142 IPR003954 GO:0003676
Stsc211617g00002 282 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Stsc211617g00002 282 SUPERFAMILY RNA-binding domain, RBD 38 151 IPR035979 GO:0003676
Stsc211617g00002 282 SUPERFAMILY Retrovirus zinc finger-like domains 146 182 IPR036875 GO:0003676|GO:0008270
Stsc211617g00002 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
Stsc211617g00002 282 ProSiteProfiles Zinc finger CCHC-type profile. 164 180 IPR001878 GO:0003676|GO:0008270
Stsc211617g00002 282 MobiDBLite consensus disorder prediction 176 259 - -
Stsc211617g00002 282 SMART rrm1_1 69 142 IPR000504 GO:0003723
Stsc211617g00002 282 Gene3D - 155 192 - -
Stsc211617g00002 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 139 IPR000504 GO:0003723
Stsc211617g00002 282 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 1 152 - -
Stsc211617g00002 282 Gene3D - 34 241 IPR012677 -
Stsc211617g00002 282 MobiDBLite consensus disorder prediction 24 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211617g00002 Stsc-Chr211617 6459 7592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211617g00002 55 131 Eukaryotic Initiation Factors Gene Family AT3G11400 36.364 2.01e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211617g00002 K13154 - gmx:100814914 296.204