Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211617g00001 ATGGAAGAAGGCTTAGCCCAAAACTCAGTTCCTTCAGGTCCCATTGATAAGTCAAAGATTCTGGATGTGAAACCGATGCGTAGTTTGATACCTGTGTTCCCAATGTCACCACAAGCTCCACCCTCTGGCCAGTACCCTTCTGGGTTTTCGCCGTTTTTCCCATTTGGTGCACCTCAGCAAAGCTCTGGGGCGGCCGCAAGGGGTGGCGCCGTACCAGCTCCGATACGGGCTTATAGAAGCCCGGCAGGAGATGCTAGCACGTCGATGGATGGCTCTCGTGGCAAGAAGAATGCAGCTTCTCACAGTGCTAGATCGGCTGCAAAGAGGAATAAGAAAGCTTTAGGACAACCTATTGATGCAAGTTCTTTGGTTGGTATAACCCCGGCCCAAAGGGAAGATGGGAGCCGTGAAGTTGTTAATCTTATAATGACAACATTTGATGCAATTCGGAGAAGGATTTGTCAACTTGATGATGCCAAGGAATTGAGCACCGGGTCAATCAAGCGGTCGGATCTGAAAGCTTGCAATACTTTGATGAGCAAAGGGATTCGGACAAACCTGAGGAAGAGAGTGGGATCGGTTCCCGGGGTTGAGATAGGGGATATCTTCTATTTCCGAATGGAGTTATGTATTGTGGGTCTGCATGCTCCCTCCATGGGTGGAATTGACTCTTTGCATGTGAAGGGTGAGTTCGAGGAGGAAATTATTGCTATAAGCATTGTTTCCTCAGGAGAATATGATGATGAAGCTGAGGATAATGATGTTATAATTTATACCGGTCAGGGTGGGAACTTTAACAAGAAAGAAAAACATGTGACAGATCAAAAGCTTGAAAGGGGTAATCTTGCTTTGGATAGAAGTTCGCGACAACGAAATGAGGTAAGAGTCATTCGGGGCATAAGAGATGCTTCTAATCCGAATTCAAAAATATATGTCTATGATGGTCTGTATAAAATCCAAGAATCATGGGTCGACAGGGCAAAAAGTGGAGGTGGTGTTTTCAAGTATAAGTTGGTAAGAGTTCCCGGGCAGCCAAGTGCAATTGCTGTGTGGAAATCAGTTCAGAAATTCAAGTCTGGCTTCCCTTCGAGGACTGGACTTATTATTGGAGACCTCTCCTCGGGAGCCGAGAGTATTCCGGTATCACTTGTCAATGATGTTGATAATGTGAAGGCGCCTGCATATTTCACTTATTTCCATTCCCTCAGGCACCCGAAATCGTTCAGTTTGATGCAGCCTTCACATGGCTGCAGCTGTGCTAAATCATGTGTCCCTGGTGACTTGAACTGCTCTTGCATTAGGAGAAACGACGGAGATTTTCCGTACACCGGTGGGGGCATTTTGGTGAGTCGTAGGCCGCTGATTCATGAATGTGGCCCGACANNNNNNNNNNTTCCTAACTGCAAAAATCGAGCCTCCCAGACCGGTCTGAAGCACCACATGGAAGTGTTCAAAACAAAGGATAGAGGATGGGGTCTTAGATCACTGGATCCTATTCGTGCCGGTTCTTTCATTTGTGAGTATGCAGGAGAAGTTATTGATCAAGCAAGGTTGAATCAGCTTGCAAAGGAAGGAGATTGTAATGAATATGTTTTCGACACAACTCGAATTTATGAGGAATTCAAGTGGAACTATGAACCCAGGTTACTGGAAGAAGTTAGCACAAATGACTCTACAGAAGATTACACTATGCCGTATCCTCTTATTATTAGTGCCAAGAATGTCGGGAATGTAGCTAGATTCATGAACCATAGTTGCTCCCCGAATGTTTTCTGGCAACCTGTCTTGTATGAAGAAAACAATCAATCATTCCTACATGTGGCGTTTTTCGCTATCAGTCACATTCCTCCGATGACAGAATTAACATATGACTATGGTATTGCTAGTTCTGAGCATGCTGGCGGTAGCAGAGGTCCCAAAGGGAAAAAGAGATGCTTATGTAGATCGTCTAAATGCCGCGGTACATTTGGATAA 1974 0.4504 MEEGLAQNSVPSGPIDKSKILDVKPMRSLIPVFPMSPQAPPSGQYPSGFSPFFPFGAPQQSSGAAARGGAVPAPIRAYRSPAGDASTSMDGSRGKKNAASHSARSAAKRNKKALGQPIDASSLVGITPAQREDGSREVVNLIMTTFDAIRRRICQLDDAKELSTGSIKRSDLKACNTLMSKGIRTNLRKRVGSVPGVEIGDIFYFRMELCIVGLHAPSMGGIDSLHVKGEFEEEIIAISIVSSGEYDDEAEDNDVIIYTGQGGNFNKKEKHVTDQKLERGNLALDRSSRQRNEVRVIRGIRDASNPNSKIYVYDGLYKIQESWVDRAKSGGGVFKYKLVRVPGQPSAIAVWKSVQKFKSGFPSRTGLIIGDLSSGAESIPVSLVNDVDNVKAPAYFTYFHSLRHPKSFSLMQPSHGCSCAKSCVPGDLNCSCIRRNDGDFPYTGGGILVSRRPLIHECGPTXXXXPNCKNRASQTGLKHHMEVFKTKDRGWGLRSLDPIRAGSFICEYAGEVIDQARLNQLAKEGDCNEYVFDTTRIYEEFKWNYEPRLLEEVSTNDSTEDYTMPYPLIISAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFAISHIPPMTELTYDYGIASSEHAGGSRGPKGKKRCLCRSSKCRGTFG 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211617g00001 657 Gene3D - 174 360 IPR036987 -
Stsc211617g00001 657 Pfam SAD/SRA domain 191 344 IPR003105 -
Stsc211617g00001 657 Gene3D SET domain 362 656 IPR046341 -
Stsc211617g00001 657 ProSiteProfiles Post-SET domain profile. 641 657 IPR003616 -
Stsc211617g00001 657 MobiDBLite consensus disorder prediction 85 99 - -
Stsc211617g00001 657 SUPERFAMILY SET domain 378 654 IPR046341 -
Stsc211617g00001 657 Pfam Pre-SET motif 373 471 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc211617g00001 657 ProSiteProfiles YDG domain profile. 192 340 IPR003105 -
Stsc211617g00001 657 SMART set_7 479 632 IPR001214 GO:0005515
Stsc211617g00001 657 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 21 657 IPR025794 GO:0016571
Stsc211617g00001 657 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 175 359 - -
Stsc211617g00001 657 SUPERFAMILY PUA domain-like 174 361 IPR015947 -
Stsc211617g00001 657 Pfam SET domain 490 626 IPR001214 GO:0005515
Stsc211617g00001 657 ProSiteProfiles Pre-SET domain profile. 415 476 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc211617g00001 657 SMART preset_2 369 463 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Stsc211617g00001 657 MobiDBLite consensus disorder prediction 1 114 - -
Stsc211617g00001 657 ProSiteProfiles SET domain profile. 479 626 IPR001214 GO:0005515
Stsc211617g00001 657 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 88 652 - -
Stsc211617g00001 657 SMART G9a_1 187 344 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211617g00001 Stsc-Chr211617 706 4623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211617g00001 8 657 Su(var)3-9 homologs AT1G73100 51.929 0.0 689
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc211617g00001 SAD_SRA 1.6e-48 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211617g00001 K24405 - gmx:100812173 1011.52