Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211615g00005 ATGGAAGGTCCTCTCATCAACGACTCCACATTTTCCTCCGCCAACCCTTCCTCTTACTCCCTCTCCGAGATTTGGCCTCCCACCACCTTCTCTCCCATCCACAACCATAAGAGGAAGGAATCTTCCCCCTCCTCCTCCACCACCACCACCGCCGCCGCCGCCGCCAATCACTTGGATGATTCCTACGGCAATAAGCGTAAGAAACTGAGAGTATCCTTCCAGGAGGAGAACCGTGGCGGCGATTCGAAAGACGAGGTAGGTGCGAGTTTAGTTGGCGGTAACAAGTTAGCTCGGCAAGGCAGTGGCGGCGGCAGCGGTGGCGGCGCTAAGGCTTCTTGTCAGCAACCGCCTAAACAAGACTTCATCCATGTGAGAGCCAGGAGAGGCCAGGCTACCGATAGCCACAGTCTCGCTGAGAGAGCGAGGAGAGAAAAGATTAGTGAGAGGATGAAAATTCTTCAAGATTTAGTCCCTGGATGTAACAAGGTAATTGGCAAAGCACTTGTGCTAGATGAGATAATCAATTACATACAGTCGCTTCAGCGTCAGTTTCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGATTGAACATGAGTTCTGTTGTTGAATGTTTTCCTTCAAAAGACGGCATTGATAGAAACATGAACTAA 651 0.4962 MEGPLINDSTFSSANPSSYSLSEIWPPTTFSPIHNHKRKESSPSSSTTTTAAAAANHLDDSYGNKRKKLRVSFQEENRGGDSKDEVGASLVGGNKLARQGSGGGSGGGAKASCQQPPKQDFIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQFLSMKLEAVNSRLNMSSVVECFPSKDGIDRNMN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211615g00005 216 Gene3D - 127 202 IPR036638 GO:0046983
Stsc211615g00005 216 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Stsc211615g00005 216 CDD bHLH_AtBPE_like 120 197 - -
Stsc211615g00005 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 180 IPR011598 GO:0046983
Stsc211615g00005 216 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 44 209 IPR024097 GO:0006355
Stsc211615g00005 216 FunFam Basic helix-loop-helix transcription factor 127 197 - -
Stsc211615g00005 216 MobiDBLite consensus disorder prediction 1 29 - -
Stsc211615g00005 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 190 IPR036638 GO:0046983
Stsc211615g00005 216 MobiDBLite consensus disorder prediction 1 66 - -
Stsc211615g00005 216 SMART finulus 136 186 IPR011598 GO:0046983
Stsc211615g00005 216 MobiDBLite consensus disorder prediction 93 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211615g00005 Stsc-Chr211615 51454 53705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211615g00005 1 209 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 46.694 7.92e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc211615g00005 HLH 1.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211615g00005 - - gmx:100799646 214.927