Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211614g00015 ATGGTGGATGAACAAGGTGACTTCGCCGGCACAATTTGCTCCATTTGCTACGAAGATCTCAAACCAGTTTCCGAAGATCTTCAATCCATCTCCATTTGCGGCCATGTCTTCCACGAGCTCTGCTTGCAGCAATGGTTCGAGTACTGTTCGAGAGCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAGTTGCAGGGCCAGCGATGCTTGTAGGCTTTACTTCCAATCGGTGGGAGATGTGGTCGAATCTGTTATGCCTCGGAAGCCGTTTGATTCCGAGGAAGATTCCGGAGTTTTGAGAAAGGAAGTGAAGAGGTTGGAAGTTAGGGTTTCGGGGCTTAGTTCGGAGTTGGAGAAGAAGGGGAAGGAAATTGAGAAGCTCAACAAGGAGCTTGGTGCCTGCAAGGAGCAAGCAAAGATTGATATAGCATTAAAAAATGAGGCCTTGAGTCAAAAAGCATCCATGGAAACCCAGCTTCGTATGAAGTCTGAGGAGCTTGAGAAGTCAACTTTTGAGTGCTATTCATTACAAAAAAGAAATATCACTTTGGCCAAAGAAATTGCGGCATTTAAATTAGTCTCTGATCTTGACCTTAATGAAGAGGAAGTTTTGAAGTATGCAACTTTGGGGAATGGGTTTAATGATAAAGATACGATAGACACATTGAGCAGATCTATGGTTCGACGTAACAGGGATTACAAAGATCTGATAGCTAAACGCAATGAATTAGCGGCCAAGTGCAATCATCTAGAAAAGGGTGAGGCTCGGTACAGTAGAAAGCTTGAGAAGGCTAAGGAGAAGATTCTTAAATTGAAGGCTAGGGTACAAGAACTAGAGACAGCTGCAGAAGTAAGAGAGAACCAGTATCTCAAGTCTCTGAAAGCTTCAAAGATGAAAAAGTGTTCAAATAATCTTGAAAACAGCCTCAATTCTAACAATGATGTAATCACGACCAGTAATACTCCATTACATGAGCAAACAAAACAAACTTCAACCAAATCTGAAATGGATTCGAGTGTGGACAACAGTACATCTCAACAATTTTCATGGATAGCCAACGGCATCCCTACTGAAAGTAAAGCTCTAAATGTTAGTAATGGCAATAAATTCACCCCAGCTCTTGGTAAAGACAGGGATTTTATATCACTTGATGATGATGCTTCTGAATTTACTGAACCTTTGTGTGGACGGCCAAGACGCGACTACAATGATCAATACAGGGATGGTGCTGCTCTTAGCAAGCCTACTGTAGCAAAGTCAGATGCAGCATCTGAAAAGATGAAAGAAACAGTAGTTCAAGGAACATGTAACATGGCTGATTCTTCAAGAATTGATATTGACGTTGAAATGGCTAACAATGATGTCATTGATTTGGATGATGACATAACATTACTTGATAATGTTCAACAAGTTCAACCCAAGGTTAACATTATAAAGGAGTCGCCACCAGTAATTGCAAATCCAGGGGACATTTGTTTCTCTGGTGGATTGCTTGGTCCTGATGGCTCACATAGGTACTTAGGTAAATGGTGCAAGCGTGGACAAAACGGTGAATCTCAATCTGCAAAAGGAGGATTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATTAAAGTTCTAAGAACAGCAGGCCAAACCTTCAAGGATGAGAAGGAAAATGACAAGGAGTCAAAAAGGGTAAAGGTTGGACCTAAAACAAGTAGTTTGAGACCCCAAGGATGTCTTCAGATAGAGCATTTTTTTGCCAGGGTTAATCACTAA 1764 0.4195 MVDEQGDFAGTICSICYEDLKPVSEDLQSISICGHVFHELCLQQWFEYCSRAKKHTCPVCKQSCRASDACRLYFQSVGDVVESVMPRKPFDSEEDSGVLRKEVKRLEVRVSGLSSELEKKGKEIEKLNKELGACKEQAKIDIALKNEALSQKASMETQLRMKSEELEKSTFECYSLQKRNITLAKEIAAFKLVSDLDLNEEEVLKYATLGNGFNDKDTIDTLSRSMVRRNRDYKDLIAKRNELAAKCNHLEKGEARYSRKLEKAKEKILKLKARVQELETAAEVRENQYLKSLKASKMKKCSNNLENSLNSNNDVITTSNTPLHEQTKQTSTKSEMDSSVDNSTSQQFSWIANGIPTESKALNVSNGNKFTPALGKDRDFISLDDDASEFTEPLCGRPRRDYNDQYRDGAALSKPTVAKSDAASEKMKETVVQGTCNMADSSRIDIDVEMANNDVIDLDDDITLLDNVQQVQPKVNIIKESPPVIANPGDICFSGGLLGPDGSHRYLGKWCKRGQNGESQSAKGGLIAVGADGRGGRIKVLRTAGQTFKDEKENDKESKRVKVGPKTSSLRPQGCLQIEHFFARVNH 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211614g00015 587 MobiDBLite consensus disorder prediction 311 341 - -
Stsc211614g00015 587 CDD RING-H2 13 61 - -
Stsc211614g00015 587 SMART ring_2 13 60 IPR001841 -
Stsc211614g00015 587 Coils Coil 247 288 - -
Stsc211614g00015 587 MobiDBLite consensus disorder prediction 549 569 - -
Stsc211614g00015 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 68 IPR013083 -
Stsc211614g00015 587 SUPERFAMILY RING/U-box 8 65 - -
Stsc211614g00015 587 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Stsc211614g00015 587 Coils Coil 103 137 - -
Stsc211614g00015 587 Pfam Ring finger domain 12 61 IPR001841 -
Stsc211614g00015 587 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 585 - -
Stsc211614g00015 587 MobiDBLite consensus disorder prediction 549 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211614g00015 Stsc-Chr211614 74510 77807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211614g00015 431 587 C3H Transcription Factor Family AT4G01270 34.783 3.95e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211614g00015 K11985 - gmx:100812811 672.93