Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211612g00009 ATGGGTGAGAAGGATATTGGTAATGAGGTTGTGGAGTTGAGTTTGAGTTTGAGTTTGGGAGGATGTTCTTCTTCATCTCCTCCTCCTCCTCCACCTTTGAAGCCACAGAGATCGGTTCCTGTGAATAACATCAACAACAACAACAAGAGTTCCTGGAATGAGTTGTTTCAGTTACCACAGGTAAATAGGAGCACCGATATGAGGCCGTTCCACGGCGGCGGAATCAACATGAATTCTATGCCGTCAACGGCGGAGAATCCGCCGCCGGATTGCAACCAAGACAACCGTGATTCATCGCCGAATAACAGCAGTTTATCGAGCGGCAGTTGCAAGAGAAGCGATAGAGAAGAAGACAACGGTGGCGGCGCCGCCACCATCGGCATCGAATTGGCGTCGTGTTCTAGGGGAAGTGATGAAGAGGACGGCGGCGGCGGCGGAGATGCGGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCAATGTTGTTGGAAGAAACGTTCAAGCAGCATAACACGCTCAACCCGAAACAAAAGCAGGCATTGGCAAAGGAGTTGAATCTGAGGGCCAGACAGGTGGAGGTGTGGTTTCAGAATAGAAGAGCAAGGACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGATTGCAAAAGGAAGTGCAAGAGCTTAGGGCATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGCCCTTCTTGCGAGCGCGTCGCAGTCTCATCCACATCATCGTCCAGCTCTGCCGCCGCCTCTGCCACTCACTTGCCGGCACCACAAAGTAATTGCAACAACTCCTTGGGTGCGAACATCCACCGGCCGGTGCACGTCAACACCTGGCCATTCGAGGGACCGATTTCACGGCCATAG 948 0.5105 MGEKDIGNEVVELSLSLSLGGCSSSSPPPPPPLKPQRSVPVNNINNNNKSSWNELFQLPQVNRSTDMRPFHGGGINMNSMPSTAENPPPDCNQDNRDSSPNNSSLSSGSCKRSDREEDNGGGAATIGIELASCSRGSDEEDGGGGGDAARKKLRLTKEQSMLLEETFKQHNTLNPKQKQALAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTSSSSSAAASATHLPAPQSNCNNSLGANIHRPVHVNTWPFEGPISRP 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211612g00009 315 MobiDBLite consensus disorder prediction 76 109 - -
Stsc211612g00009 315 Pfam Homeobox associated leucine zipper 206 240 IPR003106 GO:0006355|GO:0043565
Stsc211612g00009 315 CDD homeodomain 150 207 IPR001356 GO:0003677
Stsc211612g00009 315 SUPERFAMILY Homeodomain-like 138 207 IPR009057 -
Stsc211612g00009 315 ProSitePatterns 'Homeobox' domain signature. 181 204 IPR017970 GO:0000981|GO:0006355
Stsc211612g00009 315 FunFam Homeobox-leucine zipper protein 18 135 211 - -
Stsc211612g00009 315 Pfam HD-ZIP protein N terminus 13 116 IPR006712 GO:0005634
Stsc211612g00009 315 Coils Coil 212 242 - -
Stsc211612g00009 315 MobiDBLite consensus disorder prediction 18 51 - -
Stsc211612g00009 315 SMART halz 206 249 IPR003106 GO:0006355|GO:0043565
Stsc211612g00009 315 SMART HOX_1 148 210 IPR001356 GO:0003677
Stsc211612g00009 315 ProSiteProfiles 'Homeobox' domain profile. 146 206 IPR001356 GO:0003677
Stsc211612g00009 315 MobiDBLite consensus disorder prediction 64 123 - -
Stsc211612g00009 315 Gene3D - 133 210 - -
Stsc211612g00009 315 Pfam Homeodomain 150 204 IPR001356 GO:0003677
Stsc211612g00009 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211612g00009 Stsc-Chr211612 44588 48112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211612g00009 49 263 Homeobox Transcription Factor Family AT3G60390 61.472 2.14e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc211612g00009 HD-ZIP_N 6.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211612g00009 K09338 - gmx:100819624 300.056