Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211611g00004 ATGCCGGATTTCTTGGATTCCGTTCGCCGATCCTTTGTCTTCAGAACCCCACCTCCAGCCACCGCCACCACCGACGATGATGGACCCTTCGCCGGAATCGTCGGCCGGATCGGCTCCACCATCCGCAAGTCCAGTGTCGGAGTCTTCTCTCAGTCCCGCCTCAAGCGGCCCCTTCTTCCTTCGCCACCAACACCTCCCAAGTGCTCCGACGACGCCCCTCCTTTCCGGTGGCGGAAGGGCGAACTTATCGGCAGCGGCGCCTTCGGTCGAGTGTACATGGGCATGAATCTTGACTCTGGCGAGCTTATTGCTGTCAAACAGGTTTTGATTGCGCCTGGTTGCGCTTCCAAGAAGAATACTCAGGCTAATATTAGGGAGCTTGAAGAAGAAGTGAAGCTTCTCAAGAATCTTAAGCATTCAAATATTGTTAGATACTTGGGAACTGCTAGGGAGGAGGATTCCTTAAATATTCTACTGGAGTTTGTTCCCGGTGGATCTATCTCTTCTCTCCTTGGGAAATTTGGATCCTTCCCTGAGCCGGTTATCAAAATGTATACAAAACAACTTCTACTGGGCCTCGAATACCTTCATGATAATGGGATTATTCACAGAGATATTAAGGGTGCAAACATTCTAGTTGATAACAAAGGGTGCATTAAACTAGCAGACTTCGGTGCATCCAAGAAAGTTGTTGAACTGGCAACTATTAATGGTACAAAGTCAATAAAGGGTACGCCACATTGGATGTCTCCTGAAGTGATTTTACAGACAGGACATACAATCTCTACTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGGAAGCCTCCATGGAGTCAACAGTATCCTCAAGAGGCTTCTGCTCTTTACTATGTTGGGACAACTAAATCTCATCCACCCATACCTGAACATCTGTCTCCCGAGGCAAAGGACTTTCTGCTGAAATGCTTCCACAAGGAACCAGATCTGAGGCCTTCTGCATCAGACTTGCTACTGCATCCTTTCATCTCCTGCAAATACCCCGAGTCTCGTTCAGTGTTATGCAGTTCAATCAGGGACTCTTTCAATGCAACAAAAGAGAAGAAATCTAGAGACTTTTTGGATTCTGTTCGGGGATCAACCTGCACAGGCCTGAAGGATGTCTGTCAACTGGATAGCATAAGGTTCTCAACTGTGTATTCTGAAAATCTTCTAAAGGAAGATTGCTACCAGAGAGCTGACAGCAATGATGACGACATATGTCAGATAGATGATGAAGATGATGTTTTAGTTGACACATCAATAAAACCAAAATCTCTATCTGCTTCTGAAGATATAAAGAGCTTCAATCCAATGTGTGAACCTGTGGATGACTGGCCTTGCAAGTTTGATGAAGATCAAAATTTAAAGAAAAGCAGAATGAACTTGTCTTCAGCTCAAGCTGTTAATGGAACTATGACAAGTGCTGAACCATATCCTGACGTGAAGGATAAATTCTCATTTTCATGTGAGCATTTAGGAGCTGAAGATGATGACGAACTCACTGAGTCCAAAATTAAAGCCTTCTTGGATGAGAAGGCCTTTGAACTGAAGAAACTCCAAACACCTCTTTTTGAAGAATTCCTTAATGTTTCAAATGCGGCCATTGCTCCTGCATCTATTGCAATTGTACCAAGTAATGATGTTTTGAAAATCCCAAATGCAACATCACAGGGTAGATCTCCTAGTCATGCTAGGAGACGATTGTCAATGGCTGGTAGTGCCATTGATTCAAGCAGTAATAGTCATAACAAATATCAACGAAAGCTCTGTGGTGCACCTAATCAACCTTTGCAGGAAATCCAGCCTTCTCAGCCTAAGGAATCAAAGAAGACTCTTCATGAAGCTCAGGCAGATTCATTTAGCGTTACGTCAAGCTTCTCTGAGAGACAAAGAAAATGGAAAGAAGAACTTGCTGAAGAGCTTGAGTTTAAGCGAGAGATGATGCGTAAGGCAGGATTAGGAGGGAAGATAACTTCGCCGAAAGATCGCAAGTTTTATGGAGACTGA 2040 0.4436 MPDFLDSVRRSFVFRTPPPATATTDDDGPFAGIVGRIGSTIRKSSVGVFSQSRLKRPLLPSPPTPPKCSDDAPPFRWRKGELIGSGAFGRVYMGMNLDSGELIAVKQVLIAPGCASKKNTQANIRELEEEVKLLKNLKHSNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPEPVIKMYTKQLLLGLEYLHDNGIIHRDIKGANILVDNKGCIKLADFGASKKVVELATINGTKSIKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPQEASALYYVGTTKSHPPIPEHLSPEAKDFLLKCFHKEPDLRPSASDLLLHPFISCKYPESRSVLCSSIRDSFNATKEKKSRDFLDSVRGSTCTGLKDVCQLDSIRFSTVYSENLLKEDCYQRADSNDDDICQIDDEDDVLVDTSIKPKSLSASEDIKSFNPMCEPVDDWPCKFDEDQNLKKSRMNLSSAQAVNGTMTSAEPYPDVKDKFSFSCEHLGAEDDDELTESKIKAFLDEKAFELKKLQTPLFEEFLNVSNAAIAPASIAIVPSNDVLKIPNATSQGRSPSHARRRLSMAGSAIDSSSNSHNKYQRKLCGAPNQPLQEIQPSQPKESKKTLHEAQADSFSVTSSFSERQRKWKEELAEELEFKREMMRKAGLGGKITSPKDRKFYGD 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211611g00004 679 FunFam Serine/threonine-protein kinase STE11 74 167 - -
Stsc211611g00004 679 CDD STKc_MAPKKK 76 340 - -
Stsc211611g00004 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Stsc211611g00004 679 Pfam Protein kinase domain 78 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211611g00004 679 Coils Coil 117 137 - -
Stsc211611g00004 679 SMART serkin_6 77 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211611g00004 679 MobiDBLite consensus disorder prediction 564 640 - -
Stsc211611g00004 679 MobiDBLite consensus disorder prediction 583 599 - -
Stsc211611g00004 679 FunFam Mitogen-activated protein kinase kinase kinase 2 76 369 - -
Stsc211611g00004 679 ProSitePatterns Protein kinases ATP-binding region signature. 83 106 IPR017441 GO:0005524
Stsc211611g00004 679 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 65 348 - -
Stsc211611g00004 679 Gene3D Transferase(Phosphotransferase) domain 1 76 376 - -
Stsc211611g00004 679 ProSiteProfiles Protein kinase domain profile. 77 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211611g00004 679 SUPERFAMILY Protein kinase-like (PK-like) 76 341 IPR011009 -
Stsc211611g00004 679 MobiDBLite consensus disorder prediction 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211611g00004 Stsc-Chr211611 80568 86000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211611g00004 1 667 MAP Kinase Kinase Kinase AT3G06030 55.060 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc211611g00004 Pkinase 1.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211611g00004 K20606 - gmx:100795863 880.167