Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc211609g00012 ATGATGTGTTTATTCTTCAAACGAAAATCTAAATCCGACTCAGAACTGCAAAAACCAACCAAGAACTCGCTGAATCCTCCTCTCAAGTCCACCAACTCTCTATCGTCATTGCCATCGCCATCTCCAAGGGGTGTGAGGGATTTGTACAAGGAGAACCAGCACAACTTCAGGATCTTCACTCTCAGAGAGCTCATTGATGCAACCAACGGTTTCAATAGGATGCTCAAGATCGGAGAAGGTGGTTTCGGCAGTGTTTACAGAGGAACCATTACACCTCTTCATCAACATGATGATCCAATTCTCGTTGCTGTCAAAAAGCTCAACACTCGTGGCTTTCAGGGGCATAAGGAATGGCTTACAGAAGTTCAATTTCTTGGCATCGTTAATCACCCCAATTTAGTTAAGCTATTGGGATACTGCTCTGTAGACACCGAGAGAGGGATTCAACGGTTATTAGTCTATGAATTCATGCCAAACAAGAGCCTGGAGGATCATCTATTCAACCATTCTTTACCTCACTTGCCTTGGAATACTAGATTGCACATCATGCTTGGTGCTGCTCAAGGATTGGATTACTTACATCACGGATTCGAGGTTCAGGTGATCTACAGAGATTTCAAATCTTCAAATGTGCTGTTGGACAAAAGCTTCCATCCCAAGCTTTCGGATTTCGGTCTAGCTAGGGAAGGCCCAACCGGTGGCCACACTCATGTATCTACTGCAGTAGTTGGGACACAGGGATATGCAGCACCGGAATATGTGGAAACAGGACATCTGCGAGCTAAGAGTGACATATGGAGTTTCGGTGTGGTGCTCTATGAGATACTCACAGGGAGGAGGGTACTGGAAAGAGATCGTCCCACAGGAGAACAGAAGCTTCTAGAATGGGTCAAGAAGTACCCTGCTGACACTAGCAGGTTCAGCACCATAATGGACCCTCGCCTCAGGAACCAATACTCCCTTGTTTCGGCTCGAAAGATCGCCAAGTTGGCAGATAGTTGCTTGAAGAAAAACCCCGACGACAGGCCTTCCATGAGTGACATAGTGGAAAGCTTGAAGCAAGCATTGCAGCTTTCAGAAACCTCAAGCAATTCTCAAAACATGGCTCCTCAATCTCCCAAACCTAAGTTGGTCCGAAAAGGTTCATAG 1149 0.4595 MMCLFFKRKSKSDSELQKPTKNSLNPPLKSTNSLSSLPSPSPRGVRDLYKENQHNFRIFTLRELIDATNGFNRMLKIGEGGFGSVYRGTITPLHQHDDPILVAVKKLNTRGFQGHKEWLTEVQFLGIVNHPNLVKLLGYCSVDTERGIQRLLVYEFMPNKSLEDHLFNHSLPHLPWNTRLHIMLGAAQGLDYLHHGFEVQVIYRDFKSSNVLLDKSFHPKLSDFGLAREGPTGGHTHVSTAVVGTQGYAAPEYVETGHLRAKSDIWSFGVVLYEILTGRRVLERDRPTGEQKLLEWVKKYPADTSRFSTIMDPRLRNQYSLVSARKIAKLADSCLKKNPDDRPSMSDIVESLKQALQLSETSSNSQNMAPQSPKPKLVRKGS 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc211609g00012 382 Gene3D Phosphorylase Kinase; domain 1 45 156 - -
Stsc211609g00012 382 Pfam Protein kinase domain 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211609g00012 382 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 157 367 - -
Stsc211609g00012 382 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Stsc211609g00012 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Stsc211609g00012 382 CDD STKc_IRAK 77 354 - -
Stsc211609g00012 382 SUPERFAMILY Protein kinase-like (PK-like) 53 352 IPR011009 -
Stsc211609g00012 382 MobiDBLite consensus disorder prediction 356 372 - -
Stsc211609g00012 382 MobiDBLite consensus disorder prediction 356 382 - -
Stsc211609g00012 382 MobiDBLite consensus disorder prediction 17 40 - -
Stsc211609g00012 382 PANTHER OS01G0588500 PROTEIN-RELATED 24 356 - -
Stsc211609g00012 382 Gene3D Transferase(Phosphotransferase) domain 1 157 374 - -
Stsc211609g00012 382 ProSiteProfiles Protein kinase domain profile. 71 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc211609g00012 382 MobiDBLite consensus disorder prediction 6 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc211609g00012 Stsc-Chr211609 41034 43187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc211609g00012 3 352 Glycoside Hydrolase AT3G07070 42.105 5.80e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc211609g00012 Pkinase 6.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc211609g00012 - - adu:107487526 576.63